Genome Details
Selected Rep_genome_ID: Rep_111
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Rep_111 | 1,846,848 | 94.6017% | 1.72956% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_111_CGC2 | CGCFAM_00001 | Yes | 4 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_111_CGC13 | CGCFAM_00005 | Yes | 5 | 2 | |
| Rep_111_CGC3 | CGCFAM_01114 | Yes | 4 | 1 | |
| Rep_111_CGC1 | CGCFAM_01208 | Yes | 3 | 2 | |
| Rep_111_CGC4 | CGCFAM_01519 | Yes | 6 | 1 | |
| Rep_111_CGC11 | CGCFAM_06314 | Yes | 5 | 1 | |
| Rep_111_CGC12 | CGCFAM_06315 | Yes | 6 | 2 |
Top CAZyme Families