Cluster: Rep_111_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_111
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_111_c_49 | Rep_111_c_49_1 | 1 | 3135 | + | 1.B.14.6.1 |
| pfam | Rep_111_c_49 | Rep_111_c_49_2 | 3159 | 5087 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_111_c_49 | Rep_111_c_49_3 | 5114 | 6097 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_111_c_49 | Rep_111_c_49_4 | 6220 | 9189 | + | CBM32 |
Gene ID: Rep_111_c_49_1
Type: TC
Location: 1 - 3135 (+)
Type: TC
Location: 1 - 3135 (+)
Gene ID: Rep_111_c_49_2
Type: pfam
Location: 3159 - 5087 (+)
Type: pfam
Location: 3159 - 5087 (+)
Gene ID: Rep_111_c_49_3
Type:
Location: 5114 - 6097 (+)
Type:
Location: 5114 - 6097 (+)
Gene ID: Rep_111_c_49_4
Type: CAZyme
Location: 6220 - 9189 (+)
Type: CAZyme
Location: 6220 - 9189 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.