Cluster: Rep_111_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_111
- CGC Family ID: CGCFAM_06315
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_111_c_209 | Rep_111_c_209_4 | 4137 | 5396 | + | 9.A.40.2.2 |
| pfam | Rep_111_c_209 | Rep_111_c_209_5 | 5418 | 7169 | + | tRNA-synt_2 | tRNA_anti-codon | GAD |
| CAZyme | Rep_111_c_209 | Rep_111_c_209_6 | 7248 | 9743 | + | GH2 |
| TC | Rep_111_c_209 | Rep_111_c_209_7 | 9730 | 10482 | + | 9.B.158.1.1 |
| pfam | Rep_111_c_209 | Rep_111_c_209_8 | 10479 | 11204 | + | 2-ph_phosp |
| CAZyme | Rep_111_c_209 | Rep_111_c_209_9 | 11211 | 12104 | + | GH73 |
Gene ID: Rep_111_c_209_4
Type: TC
Location: 4137 - 5396 (+)
Type: TC
Location: 4137 - 5396 (+)
Gene ID: Rep_111_c_209_5
Type: pfam
Location: 5418 - 7169 (+)
Type: pfam
Location: 5418 - 7169 (+)
Gene ID: Rep_111_c_209_6
Type: CAZyme
Location: 7248 - 9743 (+)
Type: CAZyme
Location: 7248 - 9743 (+)
Gene ID: Rep_111_c_209_7
Type: TC
Location: 9730 - 10482 (+)
Type: TC
Location: 9730 - 10482 (+)
Gene ID: Rep_111_c_209_8
Type: pfam
Location: 10479 - 11204 (+)
Type: pfam
Location: 10479 - 11204 (+)
Gene ID: Rep_111_c_209_9
Type: CAZyme
Location: 11211 - 12104 (+)
Type: CAZyme
Location: 11211 - 12104 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.