Cluster: Rep_111_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_111
- CGC Family ID: CGCFAM_01519
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_111_c_65 | Rep_111_c_65_5 | 3096 | 9101 | + | 9.A.25.1.1 |
| TF | Rep_111_c_65 | Rep_111_c_65_6 | 9115 | 9594 | - | MarR |
| pfam | Rep_111_c_65 | Rep_111_c_65_7 | 9979 | 11133 | + | Orn_DAP_Arg_deC |
| TC | Rep_111_c_65 | Rep_111_c_65_8 | 11146 | 12105 | + | 3.A.5.1.1 |
| pfam | Rep_111_c_65 | Rep_111_c_65_9 | 12117 | 13421 | + | UPF0004 | Radical_SAM | TRAM_2 |
| CAZyme | Rep_111_c_65 | Rep_111_c_65_10 | 13418 | 15694 | + | GH92 |
Gene ID: Rep_111_c_65_5
Type: TC
Location: 3096 - 9101 (+)
Type: TC
Location: 3096 - 9101 (+)
Gene ID: Rep_111_c_65_6
Type: TF
Location: 9115 - 9594 (-)
Type: TF
Location: 9115 - 9594 (-)
Gene ID: Rep_111_c_65_7
Type: pfam
Location: 9979 - 11133 (+)
Type: pfam
Location: 9979 - 11133 (+)
Gene ID: Rep_111_c_65_8
Type: TC
Location: 11146 - 12105 (+)
Type: TC
Location: 11146 - 12105 (+)
Gene ID: Rep_111_c_65_9
Type: pfam
Location: 12117 - 13421 (+)
Type: pfam
Location: 12117 - 13421 (+)
Gene ID: Rep_111_c_65_10
Type: CAZyme
Location: 13418 - 15694 (+)
Type: CAZyme
Location: 13418 - 15694 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.