Genome Details
Selected Rep_genome_ID: HRGMv2_3309
Total Genomes Found: 7
Total Genomes Found: 7
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
Scatacola_A
Species
Scatacola_A faecigallinarum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR015382 | 1,781,497 | 97.85% | 0% | China | Asia | CGMR |
| GCA_021621945.1_ASM2162194v1_genomic | 1,615,446 | 91.4% | 0% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_3309 | 1,790,157 | 98.92% | 0% | Japan | Asia | HRGM |
| MGYG000004533 | 1,756,109 | 98.92% | 0% | Israel | Asia | UHGG |
| Rep_778 | 2,008,486 | 97.8495% | 0% | NA | NA | WIS |
| SW013_maxbin.008 | 1,991,497 | 97.85% | 0% | NA | Africa | H3AfricaPhase2 |
| VatanenT_2016_SRR4408273_bin.12 | 1,830,843 | 97.84% | 0% | Estonia | Europe | ELGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3309_CGC4 | CGCFAM_00036 | Yes | 6 | 2 | |
| HRGMv2_3309_CGC1 | CGCFAM_00407 | Yes | 6 | 1 | |
| HRGMv2_3309_CGC12 | CGCFAM_00654 | Yes | 3 | 1 | |
| HRGMv2_3309_CGC3 | CGCFAM_01714 | Yes | 5 | 1 | |
| HRGMv2_3309_CGC11 | CGCFAM_02843 | Yes | 5 | 1 | |
| HRGMv2_3309_CGC10 | CGCFAM_06015 | Yes | 4 | 1 | |
| HRGMv2_3309_CGC8 | CGCFAM_10354 | Yes | 4 | 1 |
Top CAZyme Families