Cluster: HRGMv2_3309_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3309
- CGC Family ID: CGCFAM_01714
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3309_1 | HRGMv2_3309_1_375 | 350672 | 351277 | - | 3.A.8.1.1 |
| CAZyme | HRGMv2_3309_1 | HRGMv2_3309_1_376 | 351456 | 353498 | + | GT5 |
| NULL(UNKNOWN) | HRGMv2_3309_1 | HRGMv2_3309_1_377 | 353789 | 354022 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3309_1 | HRGMv2_3309_1_378 | 354083 | 355852 | - | 3.D.1.5.1 |
| TC | HRGMv2_3309_1 | HRGMv2_3309_1_379 | 355865 | 357544 | - | 3.D.1.5.1 |
Gene ID: HRGMv2_3309_1_375
Type: TC
Location: 350672 - 351277 (-)
Type: TC
Location: 350672 - 351277 (-)
Gene ID: HRGMv2_3309_1_376
Type: CAZyme
Location: 351456 - 353498 (+)
Type: CAZyme
Location: 351456 - 353498 (+)
Gene ID: HRGMv2_3309_1_377
Type:
Location: 353789 - 354022 (+)
Type:
Location: 353789 - 354022 (+)
Gene ID: HRGMv2_3309_1_378
Type: TC
Location: 354083 - 355852 (-)
Type: TC
Location: 354083 - 355852 (-)
Gene ID: HRGMv2_3309_1_379
Type: TC
Location: 355865 - 357544 (-)
Type: TC
Location: 355865 - 357544 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
Scatacola_A
Species
Scatacola_A faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.