Cluster: HRGMv2_3309_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3309
- CGC Family ID: CGCFAM_00407
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3309_1 | HRGMv2_3309_1_177 | 157582 | 158649 | + | 2.A.86.1.5 |
| pfam | HRGMv2_3309_1 | HRGMv2_3309_1_178 | 158654 | 159346 | + | Peripla_BP_6 |
| NULL(UNKNOWN) | HRGMv2_3309_1 | HRGMv2_3309_1_179 | 159343 | 159867 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3309_1 | HRGMv2_3309_1_180 | 159964 | 161019 | + | 9.B.146.1.6 |
| TC | HRGMv2_3309_1 | HRGMv2_3309_1_181 | 161032 | 162165 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_3309_1 | HRGMv2_3309_1_182 | 162152 | 163279 | + | GT28 |
Gene ID: HRGMv2_3309_1_177
Type: TC
Location: 157582 - 158649 (+)
Type: TC
Location: 157582 - 158649 (+)
Gene ID: HRGMv2_3309_1_178
Type: pfam
Location: 158654 - 159346 (+)
Type: pfam
Location: 158654 - 159346 (+)
Gene ID: HRGMv2_3309_1_179
Type:
Location: 159343 - 159867 (+)
Type:
Location: 159343 - 159867 (+)
Gene ID: HRGMv2_3309_1_180
Type: TC
Location: 159964 - 161019 (+)
Type: TC
Location: 159964 - 161019 (+)
Gene ID: HRGMv2_3309_1_181
Type: TC
Location: 161032 - 162165 (+)
Type: TC
Location: 161032 - 162165 (+)
Gene ID: HRGMv2_3309_1_182
Type: CAZyme
Location: 162152 - 163279 (+)
Type: CAZyme
Location: 162152 - 163279 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
Scatacola_A
Species
Scatacola_A faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.