Cluster: HRGMv2_3309_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3309
- CGC Family ID: CGCFAM_02843
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3309_6 | HRGMv2_3309_6_89 | 89346 | 91799 | - | 1.A.23.1.1 |
| pfam | HRGMv2_3309_6 | HRGMv2_3309_6_90 | 91819 | 92826 | - | Semialdhyde_dh | Semialdhyde_dhC |
| pfam | HRGMv2_3309_6 | HRGMv2_3309_6_91 | 92937 | 94601 | - | SMC_N | AAA_23 |
| TC | HRGMv2_3309_6 | HRGMv2_3309_6_92 | 94620 | 95360 | - | 1.B.33.1.4 |
| CAZyme | HRGMv2_3309_6 | HRGMv2_3309_6_93 | 95370 | 96218 | - | CE11 |
Gene ID: HRGMv2_3309_6_89
Type: TC
Location: 89346 - 91799 (-)
Type: TC
Location: 89346 - 91799 (-)
Gene ID: HRGMv2_3309_6_90
Type: pfam
Location: 91819 - 92826 (-)
Type: pfam
Location: 91819 - 92826 (-)
Gene ID: HRGMv2_3309_6_91
Type: pfam
Location: 92937 - 94601 (-)
Type: pfam
Location: 92937 - 94601 (-)
Gene ID: HRGMv2_3309_6_92
Type: TC
Location: 94620 - 95360 (-)
Type: TC
Location: 94620 - 95360 (-)
Gene ID: HRGMv2_3309_6_93
Type: CAZyme
Location: 95370 - 96218 (-)
Type: CAZyme
Location: 95370 - 96218 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
Scatacola_A
Species
Scatacola_A faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.