Cluster: HRGMv2_3309_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3309
- CGC Family ID: CGCFAM_00036
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3309_2 | HRGMv2_3309_2_40 | 38854 | 39702 | + | GT111 |
| pfam | HRGMv2_3309_2 | HRGMv2_3309_2_41 | 39695 | 40837 | + | GLF | NAD_binding_8 |
| CAZyme | HRGMv2_3309_2 | HRGMv2_3309_2_42 | 40827 | 41942 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3309_2 | HRGMv2_3309_2_43 | 41950 | 42951 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3309_2 | HRGMv2_3309_2_44 | 42948 | 43619 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3309_2 | HRGMv2_3309_2_45 | 43643 | 45412 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_3309_2_40
Type: CAZyme
Location: 38854 - 39702 (+)
Type: CAZyme
Location: 38854 - 39702 (+)
Gene ID: HRGMv2_3309_2_41
Type: pfam
Location: 39695 - 40837 (+)
Type: pfam
Location: 39695 - 40837 (+)
Gene ID: HRGMv2_3309_2_42
Type: CAZyme
Location: 40827 - 41942 (+)
Type: CAZyme
Location: 40827 - 41942 (+)
Gene ID: HRGMv2_3309_2_43
Type:
Location: 41950 - 42951 (+)
Type:
Location: 41950 - 42951 (+)
Gene ID: HRGMv2_3309_2_44
Type:
Location: 42948 - 43619 (+)
Type:
Location: 42948 - 43619 (+)
Gene ID: HRGMv2_3309_2_45
Type: TC
Location: 43643 - 45412 (+)
Type: TC
Location: 43643 - 45412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
Scatacola_A
Species
Scatacola_A faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.