Genome Details
Selected Rep_genome_ID: HRGMv2_1896
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG120_bin.52_sub | 2,392,660 | 97.3% | 0.84% | NA | Africa | H3AfricaPhase2 |
| BF059_bin.27 | 2,253,259 | 95.42% | 1.88% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_1896 | 2,154,977 | 97.7% | 0.707% | China | Asia | HRGM |
| SPMP97_bin.127 | 2,509,337 | 97.17% | 0.81% | Singapore | Asia | SPMP |
| SW099_bin.29 | 2,043,308 | 90.7% | 0.84% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1896_CGC13 | CGCFAM_00020 | Yes | 4 | 1 | host glycan/beta-glucan |
| HRGMv2_1896_CGC8 | CGCFAM_00040 | Yes | 9 | 5 | |
| HRGMv2_1896_CGC9 | CGCFAM_00070 | Yes | 5 | 1 | |
| HRGMv2_1896_CGC11 | CGCFAM_00105 | Yes | 3 | 1 | |
| HRGMv2_1896_CGC7 | CGCFAM_01749 | Yes | 6 | 1 | |
| HRGMv2_1896_CGC12 | CGCFAM_06073 | Yes | 4 | 1 | |
| HRGMv2_1896_CGC16 | CGCFAM_09888 | Yes | 4 | 1 |
Top CAZyme Families