Cluster: HRGMv2_1896_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1896
- CGC Family ID: CGCFAM_06073
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1896_20 | HRGMv2_1896_20_21 | 20585 | 22222 | - | 3.A.1.106.2 |
| TC | HRGMv2_1896_20 | HRGMv2_1896_20_22 | 22224 | 23906 | - | 3.A.1.106.12 |
| TC | HRGMv2_1896_20 | HRGMv2_1896_20_23 | 24016 | 24591 | - | 3.D.1.8.1 |
| CAZyme | HRGMv2_1896_20 | HRGMv2_1896_20_24 | 24648 | 26117 | - | GH77 |
Gene ID: HRGMv2_1896_20_21
Type: TC
Location: 20585 - 22222 (-)
Type: TC
Location: 20585 - 22222 (-)
Gene ID: HRGMv2_1896_20_22
Type: TC
Location: 22224 - 23906 (-)
Type: TC
Location: 22224 - 23906 (-)
Gene ID: HRGMv2_1896_20_23
Type: TC
Location: 24016 - 24591 (-)
Type: TC
Location: 24016 - 24591 (-)
Gene ID: HRGMv2_1896_20_24
Type: CAZyme
Location: 24648 - 26117 (-)
Type: CAZyme
Location: 24648 - 26117 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1896_20_21 | vegan > omnivore | 3.17858 | 0.01604 |
| HRGMv2_1896_20_21 | vegetarian > omnivore | 3.96800 | 0.01332 |
| HRGMv2_1896_20_22 | vegetarian > omnivore | 1.82401 | 0.01332 |