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Cluster: HRGMv2_1896_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1896_12 HRGMv2_1896_12_4 2315 3778 - 2.A.66.2.16
CAZyme HRGMv2_1896_12 HRGMv2_1896_12_5 3794 4783 - GT2
pfam HRGMv2_1896_12 HRGMv2_1896_12_6 4767 6260 - Wzy_C
CAZyme HRGMv2_1896_12 HRGMv2_1896_12_7 6281 7348 - GT4
CAZyme HRGMv2_1896_12 HRGMv2_1896_12_8 7345 8316 - GT2
CAZyme HRGMv2_1896_12 HRGMv2_1896_12_9 8319 9116 - GT111
NULL(UNKNOWN) HRGMv2_1896_12 HRGMv2_1896_12_10 9335 9736 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1896_12 HRGMv2_1896_12_11 10008 14252 - Transglut_core | ChW | ChW | ChW | ChW | ChW | ChW
CAZyme HRGMv2_1896_12 HRGMv2_1896_12_12 14358 17327 - GH73
Gene ID: HRGMv2_1896_12_4
Type: TC
Location: 2315 - 3778 (-)
Gene ID: HRGMv2_1896_12_5
Type: CAZyme
Location: 3794 - 4783 (-)
Gene ID: HRGMv2_1896_12_6
Type: pfam
Location: 4767 - 6260 (-)
Gene ID: HRGMv2_1896_12_7
Type: CAZyme
Location: 6281 - 7348 (-)
Gene ID: HRGMv2_1896_12_8
Type: CAZyme
Location: 7345 - 8316 (-)
Gene ID: HRGMv2_1896_12_9
Type: CAZyme
Location: 8319 - 9116 (-)
Gene ID: HRGMv2_1896_12_10
Type:
Location: 9335 - 9736 (-)
Gene ID: HRGMv2_1896_12_11
Type: pfam
Location: 10008 - 14252 (-)
Gene ID: HRGMv2_1896_12_12
Type: CAZyme
Location: 14358 - 17327 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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