Cluster: HRGMv2_1896_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_1896
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1896_29 | HRGMv2_1896_29_16 | 16265 | 18133 | - | 3.A.16.1.2 |
| pfam | HRGMv2_1896_29 | HRGMv2_1896_29_17 | 18254 | 19090 | - | PRD | PRD | CAT_RBD |
| CAZyme | HRGMv2_1896_29 | HRGMv2_1896_29_18 | 19109 | 20521 | - | GH1 |
| TC | HRGMv2_1896_29 | HRGMv2_1896_29_19 | 20532 | 22364 | - | 4.A.1.2.11 |
Gene ID: HRGMv2_1896_29_16
Type: TC
Location: 16265 - 18133 (-)
Type: TC
Location: 16265 - 18133 (-)
Gene ID: HRGMv2_1896_29_17
Type: pfam
Location: 18254 - 19090 (-)
Type: pfam
Location: 18254 - 19090 (-)
Gene ID: HRGMv2_1896_29_18
Type: CAZyme
Location: 19109 - 20521 (-)
Type: CAZyme
Location: 19109 - 20521 (-)
Gene ID: HRGMv2_1896_29_19
Type: TC
Location: 20532 - 22364 (-)
Type: TC
Location: 20532 - 22364 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.