Genome Details
Selected Rep_genome_ID: HRGMv2_1679
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella vaginalis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_1679 | 2,138,357 | 99.19% | 0.806% | UK | Europe | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1679_CGC8 | CGCFAM_00012 | Yes | 4 | 1 | host glycan/beta-glucan |
| HRGMv2_1679_CGC5 | CGCFAM_00027 | Yes | 3 | 2 | |
| HRGMv2_1679_CGC21 | CGCFAM_00099 | Yes | 5 | 1 | |
| HRGMv2_1679_CGC2 | CGCFAM_00205 | Yes | 4 | 1 | |
| HRGMv2_1679_CGC23 | CGCFAM_00276 | Yes | 4 | 1 | |
| HRGMv2_1679_CGC7 | CGCFAM_00284 | Yes | 9 | 4 | |
| HRGMv2_1679_CGC11 | CGCFAM_00299 | Yes | 3 | 1 | beta-glucan |
| HRGMv2_1679_CGC12 | CGCFAM_00309 | Yes | 6 | 2 | |
| HRGMv2_1679_CGC14 | CGCFAM_00413 | Yes | 7 | 2 | |
| HRGMv2_1679_CGC24 | CGCFAM_00508 | Yes | 4 | 1 | |
| HRGMv2_1679_CGC17 | CGCFAM_00815 | Yes | 5 | 1 | |
| HRGMv2_1679_CGC19 | CGCFAM_00990 | Yes | 6 | 3 | |
| HRGMv2_1679_CGC25 | CGCFAM_02988 | Yes | 4 | 2 | |
| HRGMv2_1679_CGC15 | CGCFAM_09122 | Yes | 11 | 1 | |
| HRGMv2_1679_CGC10 | CGCFAM_09838 | Yes | 11 | 1 | |
| HRGMv2_1679_CGC29 | CGCFAM_09839 | Yes | 12 | 2 |
Top CAZyme Families