Cluster: HRGMv2_1679_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1679
- CGC Family ID: CGCFAM_02988
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1679_2 | HRGMv2_1679_2_367 | 466275 | 467123 | + | GT2 |
| CAZyme | HRGMv2_1679_2 | HRGMv2_1679_2_368 | 467120 | 469354 | + | GT83 |
| STP | HRGMv2_1679_2 | HRGMv2_1679_2_369 | 469952 | 470503 | - | TetR_N |
| TC | HRGMv2_1679_2 | HRGMv2_1679_2_370 | 470714 | 471415 | + | 3.A.1.122.7 |
Gene ID: HRGMv2_1679_2_367
Type: CAZyme
Location: 466275 - 467123 (+)
Type: CAZyme
Location: 466275 - 467123 (+)
Gene ID: HRGMv2_1679_2_368
Type: CAZyme
Location: 467120 - 469354 (+)
Type: CAZyme
Location: 467120 - 469354 (+)
Gene ID: HRGMv2_1679_2_369
Type: STP
Location: 469952 - 470503 (-)
Type: STP
Location: 469952 - 470503 (-)
Gene ID: HRGMv2_1679_2_370
Type: TC
Location: 470714 - 471415 (+)
Type: TC
Location: 470714 - 471415 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.