Cluster: HRGMv2_1679_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1679
- CGC Family ID: CGCFAM_09839
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1679_4 | HRGMv2_1679_4_57 | 74425 | 76287 | - | 3.A.1.135.5 |
| TC | HRGMv2_1679_4 | HRGMv2_1679_4_58 | 76284 | 78059 | - | 3.A.1.135.5 |
| NULL(UNKNOWN) | HRGMv2_1679_4 | HRGMv2_1679_4_59 | 78442 | 78618 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1679_4 | HRGMv2_1679_4_60 | 79570 | 81315 | - | dCMP_cyt_deam_1 | Gly_kinase | MafB19-deam |
| TC | HRGMv2_1679_4 | HRGMv2_1679_4_61 | 81631 | 83721 | - | 9.B.97.5.1 |
| pfam | HRGMv2_1679_4 | HRGMv2_1679_4_62 | 83859 | 84413 | - | LemA |
| STP | HRGMv2_1679_4 | HRGMv2_1679_4_63 | 84618 | 85178 | + | TetR_N |
| TC | HRGMv2_1679_4 | HRGMv2_1679_4_64 | 85390 | 86631 | - | 2.A.55.3.6 |
| TC | HRGMv2_1679_4 | HRGMv2_1679_4_65 | 86644 | 88491 | - | 1.A.26.1.2 |
| NULL(UNKNOWN) | HRGMv2_1679_4 | HRGMv2_1679_4_66 | 88742 | 90160 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1679_4 | HRGMv2_1679_4_67 | 90701 | 92155 | - | CE4 |
| CAZyme | HRGMv2_1679_4 | HRGMv2_1679_4_68 | 92239 | 93633 | - | CE4 |
Gene ID: HRGMv2_1679_4_57
Type: TC
Location: 74425 - 76287 (-)
Type: TC
Location: 74425 - 76287 (-)
Gene ID: HRGMv2_1679_4_58
Type: TC
Location: 76284 - 78059 (-)
Type: TC
Location: 76284 - 78059 (-)
Gene ID: HRGMv2_1679_4_59
Type:
Location: 78442 - 78618 (+)
Type:
Location: 78442 - 78618 (+)
Gene ID: HRGMv2_1679_4_60
Type: pfam
Location: 79570 - 81315 (-)
Type: pfam
Location: 79570 - 81315 (-)
Gene ID: HRGMv2_1679_4_61
Type: TC
Location: 81631 - 83721 (-)
Type: TC
Location: 81631 - 83721 (-)
Gene ID: HRGMv2_1679_4_62
Type: pfam
Location: 83859 - 84413 (-)
Type: pfam
Location: 83859 - 84413 (-)
Gene ID: HRGMv2_1679_4_63
Type: STP
Location: 84618 - 85178 (+)
Type: STP
Location: 84618 - 85178 (+)
Gene ID: HRGMv2_1679_4_64
Type: TC
Location: 85390 - 86631 (-)
Type: TC
Location: 85390 - 86631 (-)
Gene ID: HRGMv2_1679_4_65
Type: TC
Location: 86644 - 88491 (-)
Type: TC
Location: 86644 - 88491 (-)
Gene ID: HRGMv2_1679_4_66
Type:
Location: 88742 - 90160 (-)
Type:
Location: 88742 - 90160 (-)
Gene ID: HRGMv2_1679_4_67
Type: CAZyme
Location: 90701 - 92155 (-)
Type: CAZyme
Location: 90701 - 92155 (-)
Gene ID: HRGMv2_1679_4_68
Type: CAZyme
Location: 92239 - 93633 (-)
Type: CAZyme
Location: 92239 - 93633 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.