Cluster: HRGMv2_1679_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1679
- CGC Family ID: CGCFAM_00309
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1679_1 | HRGMv2_1679_1_674 | 824830 | 826980 | + | GT51 |
| NULL(UNKNOWN) | HRGMv2_1679_1 | HRGMv2_1679_1_675 | 827305 | 827412 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1679_1 | HRGMv2_1679_1_676 | 827409 | 827849 | - | Arg_repressor |
| CAZyme | HRGMv2_1679_1 | HRGMv2_1679_1_677 | 828042 | 829076 | - | GT2 |
| pfam | HRGMv2_1679_1 | HRGMv2_1679_1_678 | 829153 | 830043 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | HRGMv2_1679_1 | HRGMv2_1679_1_679 | 830065 | 832473 | - | 3.A.1.26.5 |
Gene ID: HRGMv2_1679_1_674
Type: CAZyme
Location: 824830 - 826980 (+)
Type: CAZyme
Location: 824830 - 826980 (+)
Gene ID: HRGMv2_1679_1_675
Type:
Location: 827305 - 827412 (-)
Type:
Location: 827305 - 827412 (-)
Gene ID: HRGMv2_1679_1_676
Type: TF
Location: 827409 - 827849 (-)
Type: TF
Location: 827409 - 827849 (-)
Gene ID: HRGMv2_1679_1_677
Type: CAZyme
Location: 828042 - 829076 (-)
Type: CAZyme
Location: 828042 - 829076 (-)
Gene ID: HRGMv2_1679_1_678
Type: pfam
Location: 829153 - 830043 (-)
Type: pfam
Location: 829153 - 830043 (-)
Gene ID: HRGMv2_1679_1_679
Type: TC
Location: 830065 - 832473 (-)
Type: TC
Location: 830065 - 832473 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.