Cluster: HRGMv2_1679_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1679
- CGC Family ID: CGCFAM_00990
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1679_2 | HRGMv2_1679_2_222 | 287467 | 289242 | + | GH154 |
| CAZyme | HRGMv2_1679_2 | HRGMv2_1679_2_223 | 289282 | 290415 | + | GH88 |
| TC | HRGMv2_1679_2 | HRGMv2_1679_2_224 | 290576 | 291385 | + | 4.A.6.1.13 |
| TC | HRGMv2_1679_2 | HRGMv2_1679_2_225 | 291375 | 292211 | + | 4.A.6.1.13 |
| TC | HRGMv2_1679_2 | HRGMv2_1679_2_226 | 292258 | 292758 | + | 4.A.6.1.13 |
| CAZyme | HRGMv2_1679_2 | HRGMv2_1679_2_227 | 292845 | 294641 | + | PL37 |
Gene ID: HRGMv2_1679_2_222
Type: CAZyme
Location: 287467 - 289242 (+)
Type: CAZyme
Location: 287467 - 289242 (+)
Gene ID: HRGMv2_1679_2_223
Type: CAZyme
Location: 289282 - 290415 (+)
Type: CAZyme
Location: 289282 - 290415 (+)
Gene ID: HRGMv2_1679_2_224
Type: TC
Location: 290576 - 291385 (+)
Type: TC
Location: 290576 - 291385 (+)
Gene ID: HRGMv2_1679_2_225
Type: TC
Location: 291375 - 292211 (+)
Type: TC
Location: 291375 - 292211 (+)
Gene ID: HRGMv2_1679_2_226
Type: TC
Location: 292258 - 292758 (+)
Type: TC
Location: 292258 - 292758 (+)
Gene ID: HRGMv2_1679_2_227
Type: CAZyme
Location: 292845 - 294641 (+)
Type: CAZyme
Location: 292845 - 294641 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.