Genome Details
Selected Rep_genome_ID: HRGMv2_0521
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes excrementipullorum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0521 | 2,448,533 | 99.51% | 0.961% | South Korea | Asia | HRGM |
| Rep_603 | 2,270,055 | 99.5192% | 0.977564% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0521_CGC15 | CGCFAM_00003 | Yes | 12 | 3 | |
| HRGMv2_0521_CGC27 | CGCFAM_00023 | Yes | 9 | 4 | |
| HRGMv2_0521_CGC6 | CGCFAM_00031 | Yes | 5 | 2 | pectin/galactan |
| HRGMv2_0521_CGC4 | CGCFAM_00043 | Yes | 8 | 2 | alpha-glucan |
| HRGMv2_0521_CGC25 | CGCFAM_00062 | Yes | 10 | 3 | beta-glucan |
| HRGMv2_0521_CGC24 | CGCFAM_00119 | Yes | 6 | 4 | |
| HRGMv2_0521_CGC13 | CGCFAM_00128 | Yes | 9 | 4 | |
| HRGMv2_0521_CGC14 | CGCFAM_00213 | Yes | 5 | 2 | beta-glucan |
| HRGMv2_0521_CGC18 | CGCFAM_00213 | Yes | 11 | 5 | beta-glucan |
| HRGMv2_0521_CGC5 | CGCFAM_00607 | Yes | 7 | 1 | |
| HRGMv2_0521_CGC16 | CGCFAM_00734 | Yes | 6 | 1 | |
| HRGMv2_0521_CGC23 | CGCFAM_04482 | Yes | 4 | 1 | |
| HRGMv2_0521_CGC17 | CGCFAM_05445 | Yes | 3 | 1 | |
| HRGMv2_0521_CGC2 | CGCFAM_05481 | Yes | 6 | 1 | |
| HRGMv2_0521_CGC26 | CGCFAM_07248 | Yes | 5 | 1 | |
| HRGMv2_0521_CGC10 | CGCFAM_08424 | Yes | 3 | 1 |
Top CAZyme Families