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Cluster: HRGMv2_0521_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0521_7 HRGMv2_0521_7_59 72853 75912 + 1.B.14.6.1
pfam HRGMv2_0521_7 HRGMv2_0521_7_60 75918 77459 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0521_7 HRGMv2_0521_7_61 77478 78989 + GH30_3
pfam HRGMv2_0521_7 HRGMv2_0521_7_62 79009 81075 + DUF5016 | DUF5125 | DUF5125 | DUF5121 | DUF5121
CAZyme HRGMv2_0521_7 HRGMv2_0521_7_63 81167 83386 + GH3
pfam HRGMv2_0521_7 HRGMv2_0521_7_64 83523 85841 + GDPD | BACON | BACON | Laminin_G_3 | BACON_2
CAZyme HRGMv2_0521_7 HRGMv2_0521_7_65 85916 88477 - GH89
TF HRGMv2_0521_7 HRGMv2_0521_7_66 88742 92869 + HTH_AraC
pfam HRGMv2_0521_7 HRGMv2_0521_7_67 93113 94201 + BACON
TC HRGMv2_0521_7 HRGMv2_0521_7_68 94299 97616 + 1.B.14.6.2
Gene ID: HRGMv2_0521_7_59
Type: TC
Location: 72853 - 75912 (+)
Gene ID: HRGMv2_0521_7_60
Type: pfam
Location: 75918 - 77459 (+)
Gene ID: HRGMv2_0521_7_61
Type: CAZyme
Location: 77478 - 78989 (+)
Gene ID: HRGMv2_0521_7_62
Type: pfam
Location: 79009 - 81075 (+)
Gene ID: HRGMv2_0521_7_63
Type: CAZyme
Location: 81167 - 83386 (+)
Gene ID: HRGMv2_0521_7_64
Type: pfam
Location: 83523 - 85841 (+)
Gene ID: HRGMv2_0521_7_65
Type: CAZyme
Location: 85916 - 88477 (-)
Gene ID: HRGMv2_0521_7_66
Type: TF
Location: 88742 - 92869 (+)
Gene ID: HRGMv2_0521_7_67
Type: pfam
Location: 93113 - 94201 (+)
Gene ID: HRGMv2_0521_7_68
Type: TC
Location: 94299 - 97616 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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