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Genome Details

Selected Rep_genome_ID: HRGMv2_0185
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→
Species
Prevotella rara
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
AG420_34 3,442,650 98.52% 0.23% NA Africa H3AfricaPhase2
HRGMv2_0185 3,517,972 99.21% 0.185% UK Europe HRGM
Rep_181 3,687,121 98.5992% 0.354938% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0185_CGC1 CGCFAM_00001 Yes 3 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0185_CGC40 CGCFAM_00005 Yes 4 2
HRGMv2_0185_CGC11 CGCFAM_00013 Yes 4 1
HRGMv2_0185_CGC35 CGCFAM_00034 Yes 5 4
HRGMv2_0185_CGC3 CGCFAM_00044 Yes 13 6 beta-mannan/xylan/beta-glucan
HRGMv2_0185_CGC37 CGCFAM_00048 Yes 10 3
HRGMv2_0185_CGC10 CGCFAM_00072 Yes 3 2
HRGMv2_0185_CGC28 CGCFAM_00080 Yes 4 1
HRGMv2_0185_CGC25 CGCFAM_00136 Yes 12 5 pectin
HRGMv2_0185_CGC41 CGCFAM_00178 Yes 3 2
HRGMv2_0185_CGC17 CGCFAM_00180 Yes 4 2
HRGMv2_0185_CGC2 CGCFAM_00306 Yes 18 11
HRGMv2_0185_CGC24 CGCFAM_00437 Yes 9 1
HRGMv2_0185_CGC31 CGCFAM_00523 Yes 3 1
HRGMv2_0185_CGC12 CGCFAM_00544 Yes 11 4
HRGMv2_0185_CGC26 CGCFAM_00552 Yes 5 2
HRGMv2_0185_CGC32 CGCFAM_00603 Yes 5 2
HRGMv2_0185_CGC36 CGCFAM_00669 Yes 4 1
HRGMv2_0185_CGC29 CGCFAM_00709 Yes 10 5
HRGMv2_0185_CGC30 CGCFAM_00897 Yes 7 2
HRGMv2_0185_CGC7 CGCFAM_03450 Yes 3 1
HRGMv2_0185_CGC13 CGCFAM_03892 Yes 3 1
HRGMv2_0185_CGC15 CGCFAM_03977 Yes 8 1
HRGMv2_0185_CGC4 CGCFAM_04347 Yes 3 1
HRGMv2_0185_CGC21 CGCFAM_05882 Yes 5 1
Top CAZyme Families