Cluster: HRGMv2_0185_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0185
- CGC Family ID: CGCFAM_00544
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0185_10 | HRGMv2_0185_10_38 | 58458 | 59828 | - | 2.A.1.1.55 |
| NULL(UNKNOWN) | HRGMv2_0185_10 | HRGMv2_0185_10_39 | 59845 | 59955 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0185_10 | HRGMv2_0185_10_40 | 60110 | 61039 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0185_10 | HRGMv2_0185_10_41 | 61440 | 63767 | + | GH95 |
| TC | HRGMv2_0185_10 | HRGMv2_0185_10_42 | 65410 | 68508 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0185_10 | HRGMv2_0185_10_43 | 68557 | 70119 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0185_10 | HRGMv2_0185_10_44 | 70531 | 72315 | + | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 |
| CAZyme | HRGMv2_0185_10 | HRGMv2_0185_10_45 | 72597 | 74957 | + | GH36 |
| TF | HRGMv2_0185_10 | HRGMv2_0185_10_46 | 75092 | 79096 | + | HTH_AraC |
| CAZyme | HRGMv2_0185_10 | HRGMv2_0185_10_47 | 79225 | 81165 | + | CE20 | CE20 |
| CAZyme | HRGMv2_0185_10 | HRGMv2_0185_10_48 | 81242 | 83383 | + | GH36 |
Gene ID: HRGMv2_0185_10_38
Type: TC
Location: 58458 - 59828 (-)
Type: TC
Location: 58458 - 59828 (-)
Gene ID: HRGMv2_0185_10_39
Type:
Location: 59845 - 59955 (-)
Type:
Location: 59845 - 59955 (-)
Gene ID: HRGMv2_0185_10_40
Type: TF
Location: 60110 - 61039 (+)
Type: TF
Location: 60110 - 61039 (+)
Gene ID: HRGMv2_0185_10_41
Type: CAZyme
Location: 61440 - 63767 (+)
Type: CAZyme
Location: 61440 - 63767 (+)
Gene ID: HRGMv2_0185_10_42
Type: TC
Location: 65410 - 68508 (+)
Type: TC
Location: 65410 - 68508 (+)
Gene ID: HRGMv2_0185_10_43
Type: pfam
Location: 68557 - 70119 (+)
Type: pfam
Location: 68557 - 70119 (+)
Gene ID: HRGMv2_0185_10_44
Type: pfam
Location: 70531 - 72315 (+)
Type: pfam
Location: 70531 - 72315 (+)
Gene ID: HRGMv2_0185_10_45
Type: CAZyme
Location: 72597 - 74957 (+)
Type: CAZyme
Location: 72597 - 74957 (+)
Gene ID: HRGMv2_0185_10_46
Type: TF
Location: 75092 - 79096 (+)
Type: TF
Location: 75092 - 79096 (+)
Gene ID: HRGMv2_0185_10_47
Type: CAZyme
Location: 79225 - 81165 (+)
Type: CAZyme
Location: 79225 - 81165 (+)
Gene ID: HRGMv2_0185_10_48
Type: CAZyme
Location: 81242 - 83383 (+)
Type: CAZyme
Location: 81242 - 83383 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0185_10_38 | vegan > omnivore | 3.11382 | 0.04613 |
| HRGMv2_0185_10_38 | vegetarian > omnivore | 3.49345 | 0.01073 |
| HRGMv2_0185_10_39 | vegetarian > omnivore | 5.66468 | 0.00316 |
| HRGMv2_0185_10_40 | vegetarian > omnivore | 3.76776 | 0.01930 |
| HRGMv2_0185_10_41 | vegetarian > omnivore | 3.29417 | 0.01930 |
| HRGMv2_0185_10_42 | vegetarian > omnivore | 2.98465 | 0.01584 |
| HRGMv2_0185_10_43 | vegetarian > omnivore | 3.97071 | 0.01930 |
| HRGMv2_0185_10_44 | vegetarian > omnivore | 4.02652 | 0.01930 |
| HRGMv2_0185_10_45 | vegan > omnivore | 3.17211 | 0.02695 |
| HRGMv2_0185_10_45 | vegetarian > omnivore | 3.23803 | 0.01073 |
| HRGMv2_0185_10_46 | vegan > omnivore | 3.86132 | 0.04613 |
| HRGMv2_0185_10_46 | vegetarian > omnivore | 3.96606 | 0.01073 |
| HRGMv2_0185_10_47 | vegetarian > omnivore | 2.95103 | 0.01073 |
| HRGMv2_0185_10_48 | vegan > omnivore | 1.24108 | 0.02695 |