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Cluster: HRGMv2_0185_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0185_1 HRGMv2_0185_1_46 87430 90576 - 1.B.14.6.1
CAZyme HRGMv2_0185_1 HRGMv2_0185_1_47 92569 94380 - CBM4 | GH10
pfam HRGMv2_0185_1 HRGMv2_0185_1_48 94458 95852 - SGBP_B_XBD
pfam HRGMv2_0185_1 HRGMv2_0185_1_49 95890 97602 - SusD_RagB | SusD-like_3
TC HRGMv2_0185_1 HRGMv2_0185_1_50 97654 100866 - 1.B.14.6.1
CAZyme HRGMv2_0185_1 HRGMv2_0185_1_51 101860 103629 - GH35
CAZyme HRGMv2_0185_1 HRGMv2_0185_1_52 103642 105573 - GH67
TF HRGMv2_0185_1 HRGMv2_0185_1_53 105570 109481 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0185_1 HRGMv2_0185_1_54 109564 112077 - GH115
pfam HRGMv2_0185_1 HRGMv2_0185_1_55 112319 113500 + Lipase_GDSL | Lipase_GDSL_2
TC HRGMv2_0185_1 HRGMv2_0185_1_56 113547 114968 + 2.A.2.3.2
CAZyme HRGMv2_0185_1 HRGMv2_0185_1_57 114976 116097 + GH10
CAZyme HRGMv2_0185_1 HRGMv2_0185_1_58 116140 117105 + GH43_1
Gene ID: HRGMv2_0185_1_46
Type: TC
Location: 87430 - 90576 (-)
Gene ID: HRGMv2_0185_1_47
Type: CAZyme
Location: 92569 - 94380 (-)
Gene ID: HRGMv2_0185_1_48
Type: pfam
Location: 94458 - 95852 (-)
Gene ID: HRGMv2_0185_1_49
Type: pfam
Location: 95890 - 97602 (-)
Gene ID: HRGMv2_0185_1_50
Type: TC
Location: 97654 - 100866 (-)
Gene ID: HRGMv2_0185_1_51
Type: CAZyme
Location: 101860 - 103629 (-)
Gene ID: HRGMv2_0185_1_52
Type: CAZyme
Location: 103642 - 105573 (-)
Gene ID: HRGMv2_0185_1_53
Type: TF
Location: 105570 - 109481 (-)
Gene ID: HRGMv2_0185_1_54
Type: CAZyme
Location: 109564 - 112077 (-)
Gene ID: HRGMv2_0185_1_55
Type: pfam
Location: 112319 - 113500 (+)
Gene ID: HRGMv2_0185_1_56
Type: TC
Location: 113547 - 114968 (+)
Gene ID: HRGMv2_0185_1_57
Type: CAZyme
Location: 114976 - 116097 (+)
Gene ID: HRGMv2_0185_1_58
Type: CAZyme
Location: 116140 - 117105 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→
Species
Prevotella rara

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0185_1_46 vegetarian > vegan 1.06351 0.00160

🧭 Explore Read Mapping of CGC

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