Cluster: HRGMv2_0185_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: HRGMv2_0185
- CGC Family ID: CGCFAM_00136
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0185_15 | HRGMv2_0185_15_47 | 53878 | 57066 | + | CE8 |
| NULL(UNKNOWN) | HRGMv2_0185_15 | HRGMv2_0185_15_48 | 57265 | 57546 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0185_15 | HRGMv2_0185_15_49 | 57621 | 60857 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0185_15 | HRGMv2_0185_15_50 | 60899 | 62851 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0185_15 | HRGMv2_0185_15_51 | 62873 | 64567 | + | DUF5123 |
| CAZyme | HRGMv2_0185_15 | HRGMv2_0185_15_52 | 64735 | 66873 | + | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_0185_15 | HRGMv2_0185_15_53 | 67056 | 67157 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0185_15 | HRGMv2_0185_15_54 | 67280 | 69856 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_0185_15 | HRGMv2_0185_15_55 | 70169 | 70327 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0185_15 | HRGMv2_0185_15_56 | 70426 | 71769 | - | Big_2 |
| CAZyme | HRGMv2_0185_15 | HRGMv2_0185_15_57 | 71940 | 73703 | - | PL1_2 |
| CAZyme | HRGMv2_0185_15 | HRGMv2_0185_15_58 | 73786 | 76362 | - | GH105 | GH28 |
Gene ID: HRGMv2_0185_15_47
Type: CAZyme
Location: 53878 - 57066 (+)
Type: CAZyme
Location: 53878 - 57066 (+)
Gene ID: HRGMv2_0185_15_48
Type:
Location: 57265 - 57546 (-)
Type:
Location: 57265 - 57546 (-)
Gene ID: HRGMv2_0185_15_49
Type: TC
Location: 57621 - 60857 (+)
Type: TC
Location: 57621 - 60857 (+)
Gene ID: HRGMv2_0185_15_50
Type: pfam
Location: 60899 - 62851 (+)
Type: pfam
Location: 60899 - 62851 (+)
Gene ID: HRGMv2_0185_15_51
Type: pfam
Location: 62873 - 64567 (+)
Type: pfam
Location: 62873 - 64567 (+)
Gene ID: HRGMv2_0185_15_52
Type: CAZyme
Location: 64735 - 66873 (+)
Type: CAZyme
Location: 64735 - 66873 (+)
Gene ID: HRGMv2_0185_15_53
Type:
Location: 67056 - 67157 (-)
Type:
Location: 67056 - 67157 (-)
Gene ID: HRGMv2_0185_15_54
Type: CAZyme
Location: 67280 - 69856 (+)
Type: CAZyme
Location: 67280 - 69856 (+)
Gene ID: HRGMv2_0185_15_55
Type:
Location: 70169 - 70327 (+)
Type:
Location: 70169 - 70327 (+)
Gene ID: HRGMv2_0185_15_56
Type: pfam
Location: 70426 - 71769 (-)
Type: pfam
Location: 70426 - 71769 (-)
Gene ID: HRGMv2_0185_15_57
Type: CAZyme
Location: 71940 - 73703 (-)
Type: CAZyme
Location: 71940 - 73703 (-)
Gene ID: HRGMv2_0185_15_58
Type: CAZyme
Location: 73786 - 76362 (-)
Type: CAZyme
Location: 73786 - 76362 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.