Cluster: HRGMv2_0185_CGC2
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_0185
- CGC Family ID: CGCFAM_00306
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0185_1 | HRGMv2_0185_1_25 | 41702 | 43978 | + | 2.A.37.5.2 |
| TC | HRGMv2_0185_1 | HRGMv2_0185_1_26 | 44212 | 47043 | + | 1.B.42.1.8 |
| NULL(UNKNOWN) | HRGMv2_0185_1 | HRGMv2_0185_1_27 | 47424 | 47633 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_28 | 47888 | 50596 | - | CBM67 | GH78 |
| pfam | HRGMv2_0185_1 | HRGMv2_0185_1_29 | 50969 | 52201 | + | 4HBT | Hydrolase_3 |
| pfam | HRGMv2_0185_1 | HRGMv2_0185_1_30 | 52347 | 53519 | + | Fe-ADH | ADH_Fe_C |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_31 | 53770 | 56148 | - | GH139 |
| pfam | HRGMv2_0185_1 | HRGMv2_0185_1_32 | 56237 | 57802 | - | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_33 | 58633 | 60042 | - | CE20 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_34 | 60077 | 63223 | - | GH106 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_35 | 63223 | 66033 | - | GH2 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_36 | 66044 | 69142 | - | GH2 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_37 | 69466 | 73509 | - | CBM57 | CBM97 | GH137 | GH2 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_38 | 73528 | 76170 | - | GH138 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_39 | 76167 | 78248 | - | GH78 |
| TC | HRGMv2_0185_1 | HRGMv2_0185_1_40 | 78232 | 79608 | - | 2.A.1.1.74 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_41 | 79679 | 81439 | - | GH141 |
| CAZyme | HRGMv2_0185_1 | HRGMv2_0185_1_42 | 81418 | 83499 | - | GH127 |
Gene ID: HRGMv2_0185_1_25
Type: TC
Location: 41702 - 43978 (+)
Type: TC
Location: 41702 - 43978 (+)
Gene ID: HRGMv2_0185_1_26
Type: TC
Location: 44212 - 47043 (+)
Type: TC
Location: 44212 - 47043 (+)
Gene ID: HRGMv2_0185_1_27
Type:
Location: 47424 - 47633 (+)
Type:
Location: 47424 - 47633 (+)
Gene ID: HRGMv2_0185_1_28
Type: CAZyme
Location: 47888 - 50596 (-)
Type: CAZyme
Location: 47888 - 50596 (-)
Gene ID: HRGMv2_0185_1_29
Type: pfam
Location: 50969 - 52201 (+)
Type: pfam
Location: 50969 - 52201 (+)
Gene ID: HRGMv2_0185_1_30
Type: pfam
Location: 52347 - 53519 (+)
Type: pfam
Location: 52347 - 53519 (+)
Gene ID: HRGMv2_0185_1_31
Type: CAZyme
Location: 53770 - 56148 (-)
Type: CAZyme
Location: 53770 - 56148 (-)
Gene ID: HRGMv2_0185_1_32
Type: pfam
Location: 56237 - 57802 (-)
Type: pfam
Location: 56237 - 57802 (-)
Gene ID: HRGMv2_0185_1_33
Type: CAZyme
Location: 58633 - 60042 (-)
Type: CAZyme
Location: 58633 - 60042 (-)
Gene ID: HRGMv2_0185_1_34
Type: CAZyme
Location: 60077 - 63223 (-)
Type: CAZyme
Location: 60077 - 63223 (-)
Gene ID: HRGMv2_0185_1_35
Type: CAZyme
Location: 63223 - 66033 (-)
Type: CAZyme
Location: 63223 - 66033 (-)
Gene ID: HRGMv2_0185_1_36
Type: CAZyme
Location: 66044 - 69142 (-)
Type: CAZyme
Location: 66044 - 69142 (-)
Gene ID: HRGMv2_0185_1_37
Type: CAZyme
Location: 69466 - 73509 (-)
Type: CAZyme
Location: 69466 - 73509 (-)
Gene ID: HRGMv2_0185_1_38
Type: CAZyme
Location: 73528 - 76170 (-)
Type: CAZyme
Location: 73528 - 76170 (-)
Gene ID: HRGMv2_0185_1_39
Type: CAZyme
Location: 76167 - 78248 (-)
Type: CAZyme
Location: 76167 - 78248 (-)
Gene ID: HRGMv2_0185_1_40
Type: TC
Location: 78232 - 79608 (-)
Type: TC
Location: 78232 - 79608 (-)
Gene ID: HRGMv2_0185_1_41
Type: CAZyme
Location: 79679 - 81439 (-)
Type: CAZyme
Location: 79679 - 81439 (-)
Gene ID: HRGMv2_0185_1_42
Type: CAZyme
Location: 81418 - 83499 (-)
Type: CAZyme
Location: 81418 - 83499 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.