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Cluster: HRGMv2_0185_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0185_40 HRGMv2_0185_40_1 1 753 - CE8
STP HRGMv2_0185_40 HRGMv2_0185_40_2 842 3112 - HD
CAZyme HRGMv2_0185_40 HRGMv2_0185_40_3 3164 4498 - GH23
pfam HRGMv2_0185_40 HRGMv2_0185_40_4 4539 5315 - DUF5683
pfam HRGMv2_0185_40 HRGMv2_0185_40_5 5325 6221 - ParBc | HTH_ParB | ParB_dimer
TC HRGMv2_0185_40 HRGMv2_0185_40_6 6229 6993 - 8.A.3.2.3
pfam HRGMv2_0185_40 HRGMv2_0185_40_7 7148 7924 + SurE
CAZyme HRGMv2_0185_40 HRGMv2_0185_40_8 8008 9162 + GT19
pfam HRGMv2_0185_40 HRGMv2_0185_40_9 9835 10668 + Porph_ging
TC HRGMv2_0185_40 HRGMv2_0185_40_10 10655 13213 + 1.C.105.2.12
Gene ID: HRGMv2_0185_40_1
Type: CAZyme
Location: 1 - 753 (-)
Gene ID: HRGMv2_0185_40_2
Type: STP
Location: 842 - 3112 (-)
Gene ID: HRGMv2_0185_40_3
Type: CAZyme
Location: 3164 - 4498 (-)
Gene ID: HRGMv2_0185_40_4
Type: pfam
Location: 4539 - 5315 (-)
Gene ID: HRGMv2_0185_40_5
Type: pfam
Location: 5325 - 6221 (-)
Gene ID: HRGMv2_0185_40_6
Type: TC
Location: 6229 - 6993 (-)
Gene ID: HRGMv2_0185_40_7
Type: pfam
Location: 7148 - 7924 (+)
Gene ID: HRGMv2_0185_40_8
Type: CAZyme
Location: 8008 - 9162 (+)
Gene ID: HRGMv2_0185_40_9
Type: pfam
Location: 9835 - 10668 (+)
Gene ID: HRGMv2_0185_40_10
Type: TC
Location: 10655 - 13213 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→
Species
Prevotella rara

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0185_40_7 vegetarian > vegan 1.45914 0.00160
HRGMv2_0185_40_9 vegetarian > vegan 1.58516 0.00160
HRGMv2_0185_40_10 vegetarian > vegan 2.46438 0.00160

🧭 Explore Read Mapping of CGC

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