Cluster: HRGMv2_0185_CGC29
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0185
- CGC Family ID: CGCFAM_00709
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0185_21 | HRGMv2_0185_21_18 | 17945 | 18682 | + | GT2 |
| CAZyme | HRGMv2_0185_21 | HRGMv2_0185_21_19 | 18688 | 19815 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0185_21 | HRGMv2_0185_21_20 | 19960 | 20619 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0185_21 | HRGMv2_0185_21_21 | 20619 | 21167 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0185_21 | HRGMv2_0185_21_22 | 21232 | 21330 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0185_21 | HRGMv2_0185_21_23 | 21323 | 22510 | + | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| TC | HRGMv2_0185_21 | HRGMv2_0185_21_24 | 22534 | 23262 | + | 9.B.198.1.4 |
| CAZyme | HRGMv2_0185_21 | HRGMv2_0185_21_25 | 23282 | 24538 | + | GT4 |
| pfam | HRGMv2_0185_21 | HRGMv2_0185_21_26 | 24696 | 25898 | + | Radical_SAM | SPASM |
| CAZyme | HRGMv2_0185_21 | HRGMv2_0185_21_27 | 26361 | 27524 | + | GT4 |
Gene ID: HRGMv2_0185_21_18
Type: CAZyme
Location: 17945 - 18682 (+)
Type: CAZyme
Location: 17945 - 18682 (+)
Gene ID: HRGMv2_0185_21_19
Type: CAZyme
Location: 18688 - 19815 (+)
Type: CAZyme
Location: 18688 - 19815 (+)
Gene ID: HRGMv2_0185_21_20
Type:
Location: 19960 - 20619 (+)
Type:
Location: 19960 - 20619 (+)
Gene ID: HRGMv2_0185_21_21
Type: CAZyme
Location: 20619 - 21167 (+)
Type: CAZyme
Location: 20619 - 21167 (+)
Gene ID: HRGMv2_0185_21_22
Type:
Location: 21232 - 21330 (+)
Type:
Location: 21232 - 21330 (+)
Gene ID: HRGMv2_0185_21_23
Type: pfam
Location: 21323 - 22510 (+)
Type: pfam
Location: 21323 - 22510 (+)
Gene ID: HRGMv2_0185_21_24
Type: TC
Location: 22534 - 23262 (+)
Type: TC
Location: 22534 - 23262 (+)
Gene ID: HRGMv2_0185_21_25
Type: CAZyme
Location: 23282 - 24538 (+)
Type: CAZyme
Location: 23282 - 24538 (+)
Gene ID: HRGMv2_0185_21_26
Type: pfam
Location: 24696 - 25898 (+)
Type: pfam
Location: 24696 - 25898 (+)
Gene ID: HRGMv2_0185_21_27
Type: CAZyme
Location: 26361 - 27524 (+)
Type: CAZyme
Location: 26361 - 27524 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0185_21_27 | vegetarian > vegan | 1.28684 | 0.00160 |