Genome Details
Selected Rep_genome_ID: HRGMv2_0113
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium merycicum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0113 | 2,180,502 | 99.76% | 0.86% | Malaysia | Asia | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0113_CGC12 | CGCFAM_00010 | Yes | 8 | 1 | alpha-glucan |
| HRGMv2_0113_CGC4 | CGCFAM_00013 | Yes | 8 | 2 | |
| HRGMv2_0113_CGC16 | CGCFAM_00035 | Yes | 8 | 1 | fructan |
| HRGMv2_0113_CGC11 | CGCFAM_00484 | Yes | 5 | 1 | galactan |
| HRGMv2_0113_CGC23 | CGCFAM_00583 | Yes | 9 | 2 | alpha-glucan/galactan |
| HRGMv2_0113_CGC24 | CGCFAM_01325 | Yes | 3 | 1 | |
| HRGMv2_0113_CGC29 | CGCFAM_01936 | Yes | 10 | 2 | |
| HRGMv2_0113_CGC22 | CGCFAM_02316 | Yes | 6 | 1 | |
| HRGMv2_0113_CGC27 | CGCFAM_03035 | Yes | 11 | 5 | |
| HRGMv2_0113_CGC9 | CGCFAM_05118 | Yes | 7 | 3 | |
| HRGMv2_0113_CGC8 | CGCFAM_07994 | Yes | 4 | 1 | |
| HRGMv2_0113_CGC10 | CGCFAM_09490 | Yes | 3 | 1 | |
| HRGMv2_0113_CGC19 | CGCFAM_09491 | Yes | 5 | 2 | |
| HRGMv2_0113_CGC2 | CGCFAM_09492 | Yes | 3 | 1 | |
| HRGMv2_0113_CGC25 | CGCFAM_09493 | Yes | 6 | 2 | |
| HRGMv2_0113_CGC6 | CGCFAM_09494 | Yes | 8 | 2 |
Top CAZyme Families