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Cluster: HRGMv2_0113_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0113_2 HRGMv2_0113_2_137 151729 152652 + GH25
TC HRGMv2_0113_2 HRGMv2_0113_2_138 152670 152915 + 1.E.18.1.3
pfam HRGMv2_0113_2 HRGMv2_0113_2_139 154028 155479 - POTRA_1
pfam HRGMv2_0113_2 HRGMv2_0113_2_140 155479 156996 - Mur_ligase | Mur_ligase_C | Mur_ligase_M
CAZyme HRGMv2_0113_2 HRGMv2_0113_2_141 157113 158282 - GT28
TC HRGMv2_0113_2 HRGMv2_0113_2_142 158306 159622 - 2.A.103.1.4
pfam HRGMv2_0113_2 HRGMv2_0113_2_143 159609 161063 - Mur_ligase_C | Mur_ligase_M
TC HRGMv2_0113_2 HRGMv2_0113_2_144 161127 162233 - 9.B.146.1.6
Gene ID: HRGMv2_0113_2_137
Type: CAZyme
Location: 151729 - 152652 (+)
Gene ID: HRGMv2_0113_2_138
Type: TC
Location: 152670 - 152915 (+)
Gene ID: HRGMv2_0113_2_139
Type: pfam
Location: 154028 - 155479 (-)
Gene ID: HRGMv2_0113_2_140
Type: pfam
Location: 155479 - 156996 (-)
Gene ID: HRGMv2_0113_2_141
Type: CAZyme
Location: 157113 - 158282 (-)
Gene ID: HRGMv2_0113_2_142
Type: TC
Location: 158306 - 159622 (-)
Gene ID: HRGMv2_0113_2_143
Type: pfam
Location: 159609 - 161063 (-)
Gene ID: HRGMv2_0113_2_144
Type: TC
Location: 161127 - 162233 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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