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Cluster: HRGMv2_0113_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0113_19 HRGMv2_0113_19_6 6838 8175 - 2.A.1.18.1
TF HRGMv2_0113_19 HRGMv2_0113_19_7 8396 9526 + MarR
STP HRGMv2_0113_19 HRGMv2_0113_19_8 9626 10024 - Glyoxalase
TC HRGMv2_0113_19 HRGMv2_0113_19_9 10098 11255 - 2.A.1.18.2
TC HRGMv2_0113_19 HRGMv2_0113_19_10 11277 11471 - 2.A.1.18.2
pfam HRGMv2_0113_19 HRGMv2_0113_19_11 11656 12660 - ADH_zinc_N | ADH_N
CAZyme HRGMv2_0113_19 HRGMv2_0113_19_12 12877 15540 + GH13_11
pfam HRGMv2_0113_19 HRGMv2_0113_19_13 15720 16211 - Ribosomal_S9
pfam HRGMv2_0113_19 HRGMv2_0113_19_14 16232 16768 - Ribosomal_L13
CAZyme HRGMv2_0113_19 HRGMv2_0113_19_15 17008 19179 - GH77
Gene ID: HRGMv2_0113_19_6
Type: TC
Location: 6838 - 8175 (-)
Gene ID: HRGMv2_0113_19_7
Type: TF
Location: 8396 - 9526 (+)
Gene ID: HRGMv2_0113_19_8
Type: STP
Location: 9626 - 10024 (-)
Gene ID: HRGMv2_0113_19_9
Type: TC
Location: 10098 - 11255 (-)
Gene ID: HRGMv2_0113_19_10
Type: TC
Location: 11277 - 11471 (-)
Gene ID: HRGMv2_0113_19_11
Type: pfam
Location: 11656 - 12660 (-)
Gene ID: HRGMv2_0113_19_12
Type: CAZyme
Location: 12877 - 15540 (+)
Gene ID: HRGMv2_0113_19_13
Type: pfam
Location: 15720 - 16211 (-)
Gene ID: HRGMv2_0113_19_14
Type: pfam
Location: 16232 - 16768 (-)
Gene ID: HRGMv2_0113_19_15
Type: CAZyme
Location: 17008 - 19179 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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