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Cluster: HRGMv2_0113_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0113_14 HRGMv2_0113_14_16 17994 19007 + GT2
pfam HRGMv2_0113_14 HRGMv2_0113_14_17 19145 21133 - RgpF
TC HRGMv2_0113_14 HRGMv2_0113_14_18 21192 22412 - 3.A.1.103.5
pfam HRGMv2_0113_14 HRGMv2_0113_14_19 22412 23260 - ABC2_membrane
CAZyme HRGMv2_0113_14 HRGMv2_0113_14_20 23317 24645 - GT2
pfam HRGMv2_0113_14 HRGMv2_0113_14_21 24670 25563 - NTP_transferase | NTP_transf_3
pfam HRGMv2_0113_14 HRGMv2_0113_14_22 25681 28524 - YfhO | YfhO
CAZyme HRGMv2_0113_14 HRGMv2_0113_14_23 28684 29691 + GT2
CAZyme HRGMv2_0113_14 HRGMv2_0113_14_24 29731 30837 + GT4
pfam HRGMv2_0113_14 HRGMv2_0113_14_25 30962 32404 - Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_0113_14 HRGMv2_0113_14_26 32425 33444 - GT2
Gene ID: HRGMv2_0113_14_16
Type: CAZyme
Location: 17994 - 19007 (+)
Gene ID: HRGMv2_0113_14_17
Type: pfam
Location: 19145 - 21133 (-)
Gene ID: HRGMv2_0113_14_18
Type: TC
Location: 21192 - 22412 (-)
Gene ID: HRGMv2_0113_14_19
Type: pfam
Location: 22412 - 23260 (-)
Gene ID: HRGMv2_0113_14_20
Type: CAZyme
Location: 23317 - 24645 (-)
Gene ID: HRGMv2_0113_14_21
Type: pfam
Location: 24670 - 25563 (-)
Gene ID: HRGMv2_0113_14_22
Type: pfam
Location: 25681 - 28524 (-)
Gene ID: HRGMv2_0113_14_23
Type: CAZyme
Location: 28684 - 29691 (+)
Gene ID: HRGMv2_0113_14_24
Type: CAZyme
Location: 29731 - 30837 (+)
Gene ID: HRGMv2_0113_14_25
Type: pfam
Location: 30962 - 32404 (-)
Gene ID: HRGMv2_0113_14_26
Type: CAZyme
Location: 32425 - 33444 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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