Genome Details
Selected Rep_genome_ID: CGMR065214
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus formosensis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR065214 | 2,016,054 | 98.09% | 0.57% | China | Asia | CGMR |
| MGYG000001017 | 1,758,548 | 92.93% | 0% | Bangladesh | Asia | UHGG |
| SPMP08_bin.76 | 2,060,735 | 91.32% | 1.15% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR065214_CGC20 | CGCFAM_00003 | Yes | 17 | 9 | |
| CGMR065214_CGC4 | CGCFAM_00012 | Yes | 3 | 1 | host glycan/beta-glucan |
| CGMR065214_CGC9 | CGCFAM_00037 | Yes | 6 | 3 | alpha-glucan |
| CGMR065214_CGC29 | CGCFAM_00503 | Yes | 6 | 2 | |
| CGMR065214_CGC22 | CGCFAM_00575 | Yes | 3 | 1 | host glycan |
| CGMR065214_CGC3 | CGCFAM_00826 | Yes | 3 | 2 | chitin |
| CGMR065214_CGC28 | CGCFAM_01076 | Yes | 3 | 1 | |
| CGMR065214_CGC26 | CGCFAM_01400 | Yes | 10 | 4 | |
| CGMR065214_CGC21 | CGCFAM_02002 | Yes | 4 | 1 | |
| CGMR065214_CGC17 | CGCFAM_02280 | Yes | 11 | 3 | |
| CGMR065214_CGC18 | CGCFAM_03243 | Yes | 10 | 1 | |
| CGMR065214_CGC2 | CGCFAM_03887 | Yes | 25 | 4 | |
| CGMR065214_CGC24 | CGCFAM_04539 | Yes | 6 | 1 | |
| CGMR065214_CGC1 | CGCFAM_05446 | Yes | 3 | 1 | |
| CGMR065214_CGC25 | CGCFAM_05729 | Yes | 3 | 1 | |
| CGMR065214_CGC11 | CGCFAM_08824 | Yes | 6 | 3 | |
| CGMR065214_CGC16 | CGCFAM_08857 | Yes | 12 | 1 | |
| CGMR065214_CGC19 | CGCFAM_08858 | Yes | 16 | 2 | |
| CGMR065214_CGC23 | CGCFAM_08859 | Yes | 9 | 3 | |
| CGMR065214_CGC30 | CGCFAM_08860 | Yes | 10 | 1 | |
| CGMR065214_CGC6 | CGCFAM_08862 | Yes | 9 | 2 | |
| CGMR065214_CGC8 | CGCFAM_08863 | Yes | 8 | 1 |
Top CAZyme Families