Cluster: CGMR065214_CGC20
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: CGMR065214
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_144478 | k141_144478_279 | 293399 | 294286 | - | GT2 |
| CAZyme | k141_144478 | k141_144478_280 | 294288 | 295280 | - | GT2 |
| pfam | k141_144478 | k141_144478_281 | 295301 | 296125 | - | LicD |
| CAZyme | k141_144478 | k141_144478_282 | 296122 | 297261 | - | GT4 |
| TC | k141_144478 | k141_144478_283 | 297254 | 298687 | - | 2.A.66.2.23 |
| pfam | k141_144478 | k141_144478_284 | 298684 | 299628 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | k141_144478 | k141_144478_285 | 299615 | 299965 | - | DUF2304 |
| CAZyme | k141_144478 | k141_144478_286 | 299973 | 300674 | - | GT2 |
| CAZyme | k141_144478 | k141_144478_287 | 300773 | 301603 | - | GT2 |
| CAZyme | k141_144478 | k141_144478_288 | 301606 | 302850 | - | GT4 |
| CAZyme | k141_144478 | k141_144478_289 | 302934 | 305870 | - | GT2 |
| pfam | k141_144478 | k141_144478_290 | 305890 | 307224 | - | DUF2142 |
| pfam | k141_144478 | k141_144478_291 | 307234 | 308124 | - | PS_pyruv_trans |
| TC | k141_144478 | k141_144478_292 | 308121 | 309281 | - | 3.A.1.103.1 |
| pfam | k141_144478 | k141_144478_293 | 309292 | 310101 | - | ABC2_membrane |
| CAZyme | k141_144478 | k141_144478_294 | 310098 | 311039 | - | GT2 |
| CAZyme | k141_144478 | k141_144478_295 | 311061 | 312236 | - | GT4 |
Gene ID: k141_144478_279
Type: CAZyme
Location: 293399 - 294286 (-)
Type: CAZyme
Location: 293399 - 294286 (-)
Gene ID: k141_144478_280
Type: CAZyme
Location: 294288 - 295280 (-)
Type: CAZyme
Location: 294288 - 295280 (-)
Gene ID: k141_144478_281
Type: pfam
Location: 295301 - 296125 (-)
Type: pfam
Location: 295301 - 296125 (-)
Gene ID: k141_144478_282
Type: CAZyme
Location: 296122 - 297261 (-)
Type: CAZyme
Location: 296122 - 297261 (-)
Gene ID: k141_144478_283
Type: TC
Location: 297254 - 298687 (-)
Type: TC
Location: 297254 - 298687 (-)
Gene ID: k141_144478_284
Type: pfam
Location: 298684 - 299628 (-)
Type: pfam
Location: 298684 - 299628 (-)
Gene ID: k141_144478_285
Type: pfam
Location: 299615 - 299965 (-)
Type: pfam
Location: 299615 - 299965 (-)
Gene ID: k141_144478_286
Type: CAZyme
Location: 299973 - 300674 (-)
Type: CAZyme
Location: 299973 - 300674 (-)
Gene ID: k141_144478_287
Type: CAZyme
Location: 300773 - 301603 (-)
Type: CAZyme
Location: 300773 - 301603 (-)
Gene ID: k141_144478_288
Type: CAZyme
Location: 301606 - 302850 (-)
Type: CAZyme
Location: 301606 - 302850 (-)
Gene ID: k141_144478_289
Type: CAZyme
Location: 302934 - 305870 (-)
Type: CAZyme
Location: 302934 - 305870 (-)
Gene ID: k141_144478_290
Type: pfam
Location: 305890 - 307224 (-)
Type: pfam
Location: 305890 - 307224 (-)
Gene ID: k141_144478_291
Type: pfam
Location: 307234 - 308124 (-)
Type: pfam
Location: 307234 - 308124 (-)
Gene ID: k141_144478_292
Type: TC
Location: 308121 - 309281 (-)
Type: TC
Location: 308121 - 309281 (-)
Gene ID: k141_144478_293
Type: pfam
Location: 309292 - 310101 (-)
Type: pfam
Location: 309292 - 310101 (-)
Gene ID: k141_144478_294
Type: CAZyme
Location: 310098 - 311039 (-)
Type: CAZyme
Location: 310098 - 311039 (-)
Gene ID: k141_144478_295
Type: CAZyme
Location: 311061 - 312236 (-)
Type: CAZyme
Location: 311061 - 312236 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus formosensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.