y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_3.93 |
Family | GT5 |
Protein Properties | Length: 614 Molecular Weight: 68108.1 Isoelectric Point: 6.0003 |
Chromosome | Chromosome/Scaffold: 3 Start: 763091 End: 768831 |
Description | Glycogen/starch synthases, ADP-glucose type |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 119 | 609 | 0 |
NIVFVTSEAAPYSKTGGLGDVCGSLPIALAARGHRVMVISPRYQNGTIADEKFSGASDLDSHIKIYCFGGVQEVAFFHEYREGVDWVFVDHASYHRPGNP YGDSYGAFGDNQFRFALLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPHGVYKDARCILVIHNLAHQGVEPAATYKNLGLPSEWYG ALEWVFPTWARTHALDTGEAVNILKGAIVTADRIVAVSKGYAWEITTPEGGYGLHELVTSRKSVLNGIINGIDTVEWDPSKDEHIASCYSSNDLSGKVEC KIALQEELGLPLRPECPMIGFIGRLDYQKGIDVIRAATPELMEDDVQFVMLGSGDPQFEDWMRTMEATYKNKFRGWVGFNVPISHRITAGCDILLMPSRF EPCGLNQLYAMRYATLPVVHATGGLRDTVETFNPYAHEGSGEGTGWTFSPLTKESMLAALRVAINTYKEHKSSWEGLMKRGMQRDFTWGKC |
Full Sequence |
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Protein Sequence Length: 614 Download |
MCSSQSYRDY NVRRVSFARR RNRKERCLRV RSGPVKSSSE SGIDNPKDGF NIVENKDEEK 60 SLLLGEERDG SGSVIGFHLI PQLADHEVIG SKEDETIHEE EKTEDVEGEE KAKTRVTYNI 120 VFVTSEAAPY SKTGGLGDVC GSLPIALAAR GHRVMVISPR YQNGTIADEK FSGASDLDSH 180 IKIYCFGGVQ EVAFFHEYRE GVDWVFVDHA SYHRPGNPYG DSYGAFGDNQ FRFALLCHAA 240 CEAPLVLPLG GFTYGEKCLF LVNDWHASLV PVLLAAKYRP HGVYKDARCI LVIHNLAHQG 300 VEPAATYKNL GLPSEWYGAL EWVFPTWART HALDTGEAVN ILKGAIVTAD RIVAVSKGYA 360 WEITTPEGGY GLHELVTSRK SVLNGIINGI DTVEWDPSKD EHIASCYSSN DLSGKVECKI 420 ALQEELGLPL RPECPMIGFI GRLDYQKGID VIRAATPELM EDDVQFVMLG SGDPQFEDWM 480 RTMEATYKNK FRGWVGFNVP ISHRITAGCD ILLMPSRFEP CGLNQLYAMR YATLPVVHAT 540 GGLRDTVETF NPYAHEGSGE GTGWTFSPLT KESMLAALRV AINTYKEHKS SWEGLMKRGM 600 QRDFTWGKCC GSI* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 6.0e-103 | 123 | 606 | 495 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 9.0e-144 | 119 | 608 | 498 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 8.0e-175 | 119 | 608 | 498 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 119 | 608 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 119 | 612 | 495 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25893.1 | 0 | 25 | 606 | 39 | 611 | starch synthase isoform I [Manihot esculenta] |
DDBJ | BAD18845.1 | 0 | 1 | 606 | 14 | 624 | starch synthase I precursor [Phaseolus vulgaris] |
EMBL | CBI23015.1 | 0 | 62 | 610 | 1 | 550 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277372.1 | 0 | 61 | 608 | 65 | 613 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321996.1 | 0 | 1 | 606 | 12 | 627 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 119 | 606 | 11 | 497 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3vue_A | 0 | 119 | 606 | 11 | 497 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 119 | 612 | 2 | 468 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 119 | 612 | 2 | 468 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 119 | 612 | 2 | 468 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO595058 | 476 | 135 | 610 | 0 |
HO581986 | 368 | 228 | 594 | 0 |
GO872237 | 328 | 279 | 606 | 0 |
EX370286 | 315 | 277 | 591 | 0 |
DV161524 | 307 | 111 | 417 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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