y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G449500.7 |
Family | GT5 |
Protein Properties | Length: 510 Molecular Weight: 56573.4 Isoelectric Point: 8.5796 |
Chromosome | Chromosome/Scaffold: 01 Start: 48372394 End: 48376785 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 86 | 500 | 0 |
VVFVATEVAPWSKTGGLGDVLGGLPPAMAARGHRVMTISPRFDQYKDAWDTCEVAQILVGDTVETVRYFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYG PAAGEDFQDNQLRFSLFCLAALEAPRVLSLNSSKHFSGPYGEDVVFVANDWHTGLLPCYLKSMYQSRGIYMTAKVAFCIHNIAYQGRFSFSDFPLLNLPD EYKSSFDFMDGYNKPVKGRKINWLKAGILEAHRVLTVSPYYAQELVSGVDKGVELDNYLRTTGITGIVNGMDVQEWNPATDKYLSTKYEITTVLSAKPLL KEELQAEVGLPVDRDIPVIGFIGRLEEQKDILAAAIPMLVKNNVQIIVLGTGKKYMEKQIAELEKKYPDKVRGVAKFNVPLAHMIIAGADFMMIPSRFEP CGLIQLHAMRYGTVI |
Full Sequence |
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Protein Sequence Length: 510 Download |
MASLTASHFA PRNSSVSSHG SETTENFGQI GLRSQSMTHS GLRSLNMVDK LQFKTQAFAR 60 KSVKKAYATG NDTSGKIVCL QGGMTVVFVA TEVAPWSKTG GLGDVLGGLP PAMAARGHRV 120 MTISPRFDQY KDAWDTCEVA QILVGDTVET VRYFHCYKRG VDRVFVDHPM FLEKVWGKTG 180 SKIYGPAAGE DFQDNQLRFS LFCLAALEAP RVLSLNSSKH FSGPYGEDVV FVANDWHTGL 240 LPCYLKSMYQ SRGIYMTAKV AFCIHNIAYQ GRFSFSDFPL LNLPDEYKSS FDFMDGYNKP 300 VKGRKINWLK AGILEAHRVL TVSPYYAQEL VSGVDKGVEL DNYLRTTGIT GIVNGMDVQE 360 WNPATDKYLS TKYEITTVLS AKPLLKEELQ AEVGLPVDRD IPVIGFIGRL EEQKDILAAA 420 IPMLVKNNVQ IIVLGTGKKY MEKQIAELEK KYPDKVRGVA KFNVPLAHMI IAGADFMMIP 480 SRFEPCGLIQ LHAMRYGTVI LFLFMELLS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08323 | Glyco_transf_5 | 2.0e-71 | 86 | 345 | 263 | + Starch synthase catalytic domain. | ||
COG0297 | GlgA | 3.0e-92 | 84 | 503 | 430 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 5.0e-112 | 84 | 499 | 420 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 9.0e-146 | 84 | 499 | 424 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 7.0e-151 | 86 | 499 | 422 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ11735.1 | 0 | 1 | 499 | 1 | 500 | granule bound starch synthase [Gossypium hirsutum] |
GenBank | ACJ11751.1 | 0 | 1 | 499 | 1 | 500 | granule bound starch synthase [Gossypium hirsutum] |
GenBank | ACV72639.1 | 0 | 1 | 499 | 1 | 500 | granule-bound starch synthase 1 [Gossypium hirsutum] |
RefSeq | XP_002300507.1 | 0 | 1 | 501 | 1 | 503 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317054.1 | 0 | 1 | 501 | 1 | 503 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 84 | 498 | 10 | 426 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3vue_A | 0 | 84 | 498 | 10 | 426 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 84 | 501 | 1 | 394 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 84 | 501 | 1 | 394 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 84 | 501 | 1 | 394 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AJ568414 | 501 | 1 | 499 | 0 |
HO629148 | 491 | 15 | 499 | 0 |
HO825853 | 410 | 92 | 499 | 0 |
HO778340 | 379 | 75 | 449 | 0 |
DT473414 | 269 | 1 | 269 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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