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Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s104_136V6.1 |
Family | GT5 |
Protein Properties | Length: 604 Molecular Weight: 67863.6 Isoelectric Point: 6.9592 |
Chromosome | Chromosome/Scaffold: 104 Start: 909590 End: 913894 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 104 | 590 | 0 |
HVVHLASEMAPVAKVGGLGDVVTGLGRALQNRKHRVEIIIPKYKTLDTSGIKHFKELNKHFFSYFEGAMHENVVWTGLVEGLRVYFIDPLHPAEFFNRGG IYCEPDDFQRFTYFSRASLEFLLQFGKRPNLIHCHDWPVAVVAPLCKSIYANAGLNAKLAFTCHNFEPQGKNSMEALTTCGLQFQAPLYQDDFQDNVYAD QINVLKGGLMHSDFVTTVSPTYAKEVLTPEGGEGLHTTLRAMTKKFYGVMNGIDDKVWNPATDPHLMHHFSKDNVEGKKVLKDTLRLSLGMATEGVDANR PLVCCVSRLVYQKGVHLLRSAIFHSLDCGGQFILQGTSQDPVIKKDFDDLAKQYENHPHVRFVLRYEETLTHNIYGAADIFVIPSIFEPCGLTQMYSLRY GTIPVVRKTGGLADSIFDVDQKHVPVEKRNGFTFTESTEEALASALDRAFHYYREQPEWWTKLVSKVMHIDMSWDAAPIDQYLKLYT |
Full Sequence |
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Protein Sequence Length: 604 Download |
MSVEAKRFRN VVAEESPIQV TSVQRLEMAM PHLNQETFTS DHQLMMGNNV LLSSHYGNGV 60 AAPSRLVTPA TYVASSPEKQ VENLVAALVG SLERPLPMKR PRYHVVHLAS EMAPVAKVGG 120 LGDVVTGLGR ALQNRKHRVE IIIPKYKTLD TSGIKHFKEL NKHFFSYFEG AMHENVVWTG 180 LVEGLRVYFI DPLHPAEFFN RGGIYCEPDD FQRFTYFSRA SLEFLLQFGK RPNLIHCHDW 240 PVAVVAPLCK SIYANAGLNA KLAFTCHNFE PQGKNSMEAL TTCGLQFQAP LYQDDFQDNV 300 YADQINVLKG GLMHSDFVTT VSPTYAKEVL TPEGGEGLHT TLRAMTKKFY GVMNGIDDKV 360 WNPATDPHLM HHFSKDNVEG KKVLKDTLRL SLGMATEGVD ANRPLVCCVS RLVYQKGVHL 420 LRSAIFHSLD CGGQFILQGT SQDPVIKKDF DDLAKQYENH PHVRFVLRYE ETLTHNIYGA 480 ADIFVIPSIF EPCGLTQMYS LRYGTIPVVR KTGGLADSIF DVDQKHVPVE KRNGFTFTES 540 TEEALASALD RAFHYYREQP EWWTKLVSKV MHIDMSWDAA PIDQYLKLYT HTIEDGHPPA 600 SIS* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0297 | GlgA | 6.0e-126 | 105 | 589 | 492 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-167 | 104 | 589 | 486 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 4.0e-169 | 104 | 590 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-172 | 104 | 589 | 492 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02939 | PLN02939 | 0 | 92 | 593 | 503 | + transferase, transferring glycosyl groups |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001759580.1 | 0 | 72 | 589 | 126 | 639 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768603.1 | 0 | 1 | 569 | 1 | 561 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768667.1 | 0 | 1 | 603 | 1 | 603 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781398.1 | 0 | 115 | 603 | 1 | 489 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781421.1 | 0 | 31 | 603 | 267 | 877 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 104 | 589 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 104 | 589 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 104 | 589 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 104 | 589 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 104 | 589 | 2 | 473 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BY978710 | 223 | 271 | 493 | 0 |
GO851132 | 335 | 178 | 511 | 0 |
HO414580 | 295 | 295 | 589 | 0 |
CF828776 | 287 | 229 | 514 | 0 |
GW865616 | 300 | 209 | 507 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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