y
Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10006702m |
Family | GT5 |
Protein Properties | Length: 1066 Molecular Weight: 120787 Isoelectric Point: 5.9903 |
Chromosome | Chromosome/Scaffold: 7 Start: 8727070 End: 8731993 |
Description | starch synthase 4 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT5 | 569 | 1052 | 0 |
VVHIAAEMAPVAKVGGLGDVVAGLGKALQRRGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQF YGEQDDFRRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSSGD RVNPVKGAIIFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFMGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKYALRKQLGLSSAESRRPL VGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHTIYAASDLFIIPSIFEPCGLTQMIAMRYGS IPIARKTGGLNDSVFDIDDDTIPTQFQNGFTFQTADEQAFNYALERAFNHYKKDGDKWMKLIEKVMSIDFSWGSSATQYEELYS |
Full Sequence |
---|
Protein Sequence Length: 1066 Download |
MTTKLSSFCF LTHGLAAGIS CEREHGTSRR FFYLPSSRRL VSTSCKMRQQ RGFDPSKRQE 60 IKKGSPEPIL SINSSLQRNS DEESEPENGS ADSVPSLKSD VEKGTVDINH VDENTEKRED 120 IQTIEVTRRK SRPAKKKEEN VNATTDDGQN LNSLTVPEVA KALSINKSGG EQISDGQFGE 180 LMTMIRNAEK NILRLDQARA SALDDLNKIL SEKEALQGEI NVLEMKLVET DERIKTAAQE 240 KVHVELLEEQ LEKLRHEMIS PPETDGYVLA LSKELETLKM ENLTLRNDIE MLKSELDSVK 300 NTGERVVVLE KECSGLESSV KDLESKLSVS QEDVSKLSTL KTECTDLWAK VENLQLLLDR 360 ATKQAEQAVI VLQQNRDLRN KVDKIEESLK EANVYKESSE KIQQYNELMQ HKVTLLEERL 420 EKSDAEIFSY VQLYQESIKE FQETLESLKE ESKKNSRDEP VDDMPWDYWS RLLLTVDGWL 480 LEKKIASNDA DSLREMVWKK DRRIHDTYID VKDKNERDAI SAFLNLVSSP TRLSSSSGKF 540 LCLFVGFQSF LKRNLFSSSY VDSSSGLYVV HIAAEMAPVA KVGGLGDVVA GLGKALQRRG 600 HLVEIILPKY DCMQYDRVRD LRALDTVVES YFDGKLYKNK IWIGTVEGLP VHFIEPQHPS 660 KFFWRGQFYG EQDDFRRFSY FSRAALELLL QSGKKPDIIH CHDWQTAFVA PLYWDLYAPK 720 GLDSARICFT CHNFEYQGTA SASELGSCGL DVNQLNRPDR MQDHSSGDRV NPVKGAIIFS 780 NIVTTVSPTY AQEVRTAEGG KGLHSTLNFH SKKFMGILNG IDTDSWNPAT DPFLKAQFNA 840 KDLQGKEENK YALRKQLGLS SAESRRPLVG CITRLVPQKG VHLIRHAIYR TLELGGQFVL 900 LGSSPVPHIQ REFEGIEQQF KSHDHVRLLL KYDEALSHTI YAASDLFIIP SIFEPCGLTQ 960 MIAMRYGSIP IARKTGGLND SVFDIDDDTI PTQFQNGFTF QTADEQAFNY ALERAFNHYK 1020 KDGDKWMKLI EKVMSIDFSW GSSATQYEEL YSRSVARARS AANRM* 1080 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 3.0e-142 | 567 | 1051 | 493 | + synthase/transferase | ||
PRK00654 | glgA | 8.0e-179 | 567 | 1051 | 487 | + glycogen synthase; Provisional | ||
PLN02939 | PLN02939 | 0 | 2 | 1051 | 1056 | + transferase, transferring glycosyl groups | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 569 | 1051 | 488 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 567 | 1051 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16796.1 | 0 | 1 | 1064 | 1 | 1070 | starch synthase-like protein [Arabidopsis thaliana] |
EMBL | CAB40375.1 | 0 | 184 | 1060 | 1 | 870 | starch synthase, isoform V [Vigna unguiculata] |
RefSeq | NP_193558.3 | 0 | 1 | 1064 | 1 | 1039 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002274716.1 | 0 | 1 | 1062 | 1 | 1009 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298514.1 | 0 | 147 | 1064 | 1 | 887 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 569 | 1053 | 3 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 569 | 1053 | 3 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 569 | 1053 | 3 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 569 | 1053 | 3 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 569 | 1053 | 3 | 475 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |