y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s104_147V6.1 |
Family | GT5 |
Protein Properties | Length: 624 Molecular Weight: 69664.9 Isoelectric Point: 8.2962 |
Chromosome | Chromosome/Scaffold: 104 Start: 941044 End: 945029 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 101 | 588 | 0 |
HVVHLATEVAPVAKVGGLGDVVTGICRALQSKGHRVEIIIPKYKTLDKSDIKHFTKLNKRCGRSASVLYRPTPSQFFNREGVYCEPDDFKRFTYFSRASL EFMLQFGKRPNIIHCHDWPVAIVAPMYKSIYANAGLSAKIAFTCHNFEPQGKASMEALMSSGLQFKAPLHQDDFQDNLVADKINILKSGLLHSDFVTTVS PTYAKEVLTPEGGEGLHLTLRGMTKKFYDVVNGIDDKVWNPATDPHLEHHYNADDMMGKEVLKNTLRSRLSMSTEGIDAKRPLVCCVSRLVPQKGGFLLR SAIFHTLNRGGQFILQGTSQIPEIKKAFDELAQQFENHPHVRLVLRCEETLTHNIFAAADMFVIPSIFEPCGLTQMYSMRYGTVPVVRKTGGLADSVFDV DQKSIAEEKRNGLTFTEPTEELSILSSTTITESTYSSIPVNALASALDRALLCYKEQPQWWTNLKQRVMRIDMSWDAAPIDQYVKLYE |
Full Sequence |
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Protein Sequence Length: 624 Download |
MSFDAPRFHN SKAEEVPVQL ASANTLEMAM SKWTQETLAS NQLLMGNKVS LSSHYGNCVS 60 APKRLIPPAA PAIQERQVEN LVANFLGSLE RPLPEKRPRY HVVHLATEVA PVAKVGGLGD 120 VVTGICRALQ SKGHRVEIII PKYKTLDKSD IKHFTKLNKR CGRSASVLYR PTPSQFFNRE 180 GVYCEPDDFK RFTYFSRASL EFMLQFGKRP NIIHCHDWPV AIVAPMYKSI YANAGLSAKI 240 AFTCHNFEPQ GKASMEALMS SGLQFKAPLH QDDFQDNLVA DKINILKSGL LHSDFVTTVS 300 PTYAKEVLTP EGGEGLHLTL RGMTKKFYDV VNGIDDKVWN PATDPHLEHH YNADDMMGKE 360 VLKNTLRSRL SMSTEGIDAK RPLVCCVSRL VPQKGGFLLR SAIFHTLNRG GQFILQGTSQ 420 IPEIKKAFDE LAQQFENHPH VRLVLRCEET LTHNIFAAAD MFVIPSIFEP CGLTQMYSMR 480 YGTVPVVRKT GGLADSVFDV DQKSIAEEKR NGLTFTEPTE ELSILSSTTI TESTYSSIPV 540 NALASALDRA LLCYKEQPQW WTNLKQRVMR IDMSWDAAPI DQYVKLYEHT VEDGHPPASL 600 SAGPRPALPA CKLHTTEYRR NSS* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0297 | GlgA | 8.0e-124 | 102 | 588 | 509 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
TIGR02095 | glgA | 6.0e-161 | 101 | 588 | 507 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 4.0e-161 | 101 | 591 | 504 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-163 | 101 | 588 | 509 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02939 | PLN02939 | 0 | 81 | 591 | 531 | + transferase, transferring glycosyl groups |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001759580.1 | 0 | 79 | 587 | 135 | 639 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768603.1 | 0 | 1 | 545 | 1 | 558 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768667.1 | 0 | 1 | 601 | 1 | 603 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781398.1 | 0 | 112 | 601 | 1 | 489 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781421.1 | 0 | 42 | 601 | 277 | 877 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rzv_B | 0 | 101 | 594 | 2 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 101 | 594 | 2 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0 | 101 | 594 | 2 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 1rzu_A | 0 | 101 | 594 | 2 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 3d1j_A | 0 | 101 | 587 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BY978710 | 223 | 249 | 471 | 0 |
GO851132 | 318 | 173 | 489 | 0 |
CF828776 | 287 | 207 | 492 | 0 |
GW865616 | 300 | 187 | 485 | 0 |
HO414580 | 315 | 273 | 587 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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