y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g27260.1 |
Family | GT5 |
Protein Properties | Length: 790 Molecular Weight: 86880.9 Isoelectric Point: 6.4765 |
Chromosome | Chromosome/Scaffold: 3 Start: 28215955 End: 28225620 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 299 | 782 | 0 |
NVILVAAECAPWSKTGGLGDVAGALPKALSKRGHRVMVVVPMYQNYEEPRQIGESKRYQIAGQDMEVKYCHAYIDGVDFVFIDNPIFHNASSEIYGGDRT DILKRMVLLCKAAVEAPWCVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMIYARCVLVIHNIAHQGRGPLDDFSYLDLSSNYMDLFKHHDPF GGDHLNIFAAGIKAADRLVTVSHGYSWELKTPEGGWGLHGIINESDWKFQGIVNGIDTTEWNPRSDVHLKSDGYINYSLETVQTGKAQCKAALQKELGLP VRSDVPVIAFIGRLDNQKGVDLIAEAMPWIAGQGVQVILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAM MYGTVPVVHAVGGLRDTVQHYNPYEEAGLGWTFEMAEANRMIDALGHCLTTYRNYRTSWEGLQRRGMMQDLSWDNAAKSYEEVL |
Full Sequence |
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Protein Sequence Length: 790 Download |
MAASSSSLLH PSPAALLVHG ASPRPPAGGA PAAASSSCRC YGRPPAPRGG LLLRPPARGP 60 RRRPAASRPA RFCGNGVYEG PAVLRVRHST KWGPGKVLCA AGRDDDAGYQ TGEDGSHDGD 120 GVRVSNEALR ATIRKSREVL AMHRDLLEQI SEKKKLITII EASSMHNEQE PLSGDSISRL 180 DAISEGNEIG YDLQMYLDRR SYKSEAGTIH GESISDQNEY YGSLEGKLSS TDVNGSSNKV 240 SSEHYLYDSA APNVYEPQYV NGVKQDFVAQ LSQISEKEQS VTEGINNNSS SSAGVDVMNV 300 ILVAAECAPW SKTGGLGDVA GALPKALSKR GHRVMVVVPM YQNYEEPRQI GESKRYQIAG 360 QDMEVKYCHA YIDGVDFVFI DNPIFHNASS EIYGGDRTDI LKRMVLLCKA AVEAPWCVPC 420 GGFCYGDGNL VFIANDWHTA LLPVYLKAYY RDNGFMIYAR CVLVIHNIAH QGRGPLDDFS 480 YLDLSSNYMD LFKHHDPFGG DHLNIFAAGI KAADRLVTVS HGYSWELKTP EGGWGLHGII 540 NESDWKFQGI VNGIDTTEWN PRSDVHLKSD GYINYSLETV QTGKAQCKAA LQKELGLPVR 600 SDVPVIAFIG RLDNQKGVDL IAEAMPWIAG QGVQVILLGT GRQDLEDTLR RLESQHYDRV 660 RGWVGFSVRL AHRMTAGADI LLMPSRFEPC GLNQLYAMMY GTVPVVHAVG GLRDTVQHYN 720 PYEEAGLGWT FEMAEANRMI DALGHCLTTY RNYRTSWEGL QRRGMMQDLS WDNAAKSYEE 780 VLVTAKYQW* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 3.0e-85 | 298 | 780 | 508 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 4.0e-132 | 298 | 780 | 493 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 5.0e-164 | 298 | 781 | 492 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 298 | 782 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 299 | 782 | 491 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABY27639.1 | 0 | 1 | 789 | 1 | 742 | starch synthase IIc precursor [Triticum aestivum] |
GenBank | ABY27640.1 | 0 | 37 | 789 | 29 | 765 | starch synthase IIc precursor [Sorghum bicolor] |
GenBank | ACY56170.1 | 0 | 90 | 789 | 104 | 749 | soluble starch synthase II-1 [Oryza sativa Japonica Group] |
GenBank | ACY56176.1 | 0 | 90 | 789 | 104 | 749 | soluble starch synthase II-1 [Oryza sativa Indica Group] |
RefSeq | NP_001108120.1 | 0 | 1 | 789 | 1 | 775 | starch synthase IIc precursor [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 298 | 783 | 10 | 509 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 3vue_A | 0 | 298 | 783 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 298 | 786 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 298 | 788 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 298 | 788 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781048 | 392 | 399 | 790 | 0 |
CK210330 | 378 | 384 | 761 | 0 |
HO445868 | 437 | 354 | 790 | 0 |
GT040563 | 294 | 373 | 666 | 0 |
GT040563 | 70 | 662 | 731 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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