y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00012178m |
Family | AA1 |
Protein Properties | Length: 561 Molecular Weight: 61608.1 Isoelectric Point: 6.512 |
Chromosome | Chromosome/Scaffold: 086045 Start: 63 End: 2839 |
Description | SKU5 similar 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 45 | 506 | 0 |
PQQAILINGQFPGPKVECQTDDNLIINVHNNLPEPFLLSWNGLQQRKNSWQDGVSGTNCPIPPGQNFTYHMQAKDQIGSFFYFPSLAFHKAAGGFGAIHI RTRPRIPVPFPPPADEYTLLIGDWYTMNHKDLQGVLDSGRELPFPDGILINGKRSHDGADFTVEQGKTYRLRVSNVGLQNTLNVMIQDHSMTLVEVEGTH TVQNSYTSLDVHVGQSLSVLFTANRPARDYHVVVSTRFANSTLRSTAVVRYAGSSGPAFGSLPAGPGDVEFSLNQARSIRTNLTASGPRRNPQGSYHYGS INVTRTIRLASSSEGLSAGGGERRYAVNGVSFVEADTPLKLADYYNISGVFRLGGIPDAPPPGDDGAAGEVRSETAVMDSDHRSFVEVVLENGEDGVQSW HLDGHSVFVVGMDLGTWSEESRDSYNLVDAISRCTVQVYPRGWTAVLIALDNVGMWNMRSEV |
Full Sequence |
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Protein Sequence Length: 561 Download |
MAGSKTEALF FLLVWLLVVS AAAEGPYRSY DWKVTYGDIN PLDTPQQAIL INGQFPGPKV 60 ECQTDDNLII NVHNNLPEPF LLSWNGLQQR KNSWQDGVSG TNCPIPPGQN FTYHMQAKDQ 120 IGSFFYFPSL AFHKAAGGFG AIHIRTRPRI PVPFPPPADE YTLLIGDWYT MNHKDLQGVL 180 DSGRELPFPD GILINGKRSH DGADFTVEQG KTYRLRVSNV GLQNTLNVMI QDHSMTLVEV 240 EGTHTVQNSY TSLDVHVGQS LSVLFTANRP ARDYHVVVST RFANSTLRST AVVRYAGSSG 300 PAFGSLPAGP GDVEFSLNQA RSIRTNLTAS GPRRNPQGSY HYGSINVTRT IRLASSSEGL 360 SAGGGERRYA VNGVSFVEAD TPLKLADYYN ISGVFRLGGI PDAPPPGDDG AAGEVRSETA 420 VMDSDHRSFV EVVLENGEDG VQSWHLDGHS VFVVGMDLGT WSEESRDSYN LVDAISRCTV 480 QVYPRGWTAV LIALDNVGMW NMRSEVWARR YLGQQFYLRV YTPTHSLRDE LPIPDNALLC 540 GRAATTRHRL PVPPPAQLSR * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02354 | PLN02354 | 0 | 24 | 555 | 537 | + copper ion binding / oxidoreductase | ||
PLN02991 | PLN02991 | 0 | 24 | 552 | 529 | + oxidoreductase | ||
PLN02792 | PLN02792 | 0 | 30 | 553 | 528 | + oxidoreductase | ||
PLN02835 | PLN02835 | 0 | 24 | 543 | 521 | + oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 26 | 542 | 529 | + copper ion binding / pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAH67167.1 | 0 | 8 | 549 | 11 | 547 | H0211B05.4 [Oryza sativa (indica cultivar-group)] |
GenBank | EEC77800.1 | 0 | 8 | 549 | 5 | 561 | hypothetical protein OsI_16980 [Oryza sativa Indica Group] |
GenBank | EEE61490.1 | 0 | 8 | 549 | 5 | 561 | hypothetical protein OsJ_15776 [Oryza sativa Japonica Group] |
RefSeq | NP_001053555.1 | 0 | 8 | 549 | 11 | 547 | Os04g0561900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002448327.1 | 0 | 9 | 553 | 5 | 575 | hypothetical protein SORBIDRAFT_06g025300 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 28 | 546 | 4 | 544 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1asq_A | 0 | 28 | 546 | 4 | 544 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1asp_B | 0 | 28 | 546 | 4 | 544 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1asp_A | 0 | 28 | 546 | 4 | 544 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1aso_B | 0 | 28 | 546 | 4 | 544 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |