y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 320180 |
Family | AA1 |
Protein Properties | Length: 542 Molecular Weight: 61074.1 Isoelectric Point: 10.1527 |
Chromosome | Chromosome/Scaffold: 4 Start: 1969313 End: 1972352 |
Description | SKU5 similar 16 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 36 | 499 | 0 |
VTYGTRSPLGVPQQVILINGQFPGPPIEGVTNNNIVVNVINKLDEPFLITWNGIKQRRMSWQDGVLGTNCPIQPKSNWTYHFQLKDQIGTYTYFASTSMH RASGAFGGLNVNQRSVIFVPYPKPDADFTLLVGDWYKMGHKELRRRLDSGRDLPPPDGLLINGASKGLVFTGQHGKIYRFRISNVGISTSINFRIQGHMM TLVEVEGSHTLQEVYESLDIHVGQSVTVLVTLKAPVKDYFIVASTRFTKPVLTTTGILSYQGSKIRPSHPLPIGPTYHIHWSMKQARTIRLNLTANAARP NPQGSFHYGTIPINRTFVLANGRASINGKLRYTVNRVSYVNPTTPLKLADWFNIPGVFNFKTILNIPTPGPSILGTSVFDVALHEYVEFVFQNNETSIQS WHLDGTSAYVVGYGSGTWNMANRRGYNLVDAVSRHTFQVYPKSWTSILVSLDNKGMWNLRSQIW |
Full Sequence |
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Protein Sequence Length: 542 Download |
MKQKNLLLLG FLLAYCFSSV FVINAEDPYL FFTWTVTYGT RSPLGVPQQV ILINGQFPGP 60 PIEGVTNNNI VVNVINKLDE PFLITWNGIK QRRMSWQDGV LGTNCPIQPK SNWTYHFQLK 120 DQIGTYTYFA STSMHRASGA FGGLNVNQRS VIFVPYPKPD ADFTLLVGDW YKMGHKELRR 180 RLDSGRDLPP PDGLLINGAS KGLVFTGQHG KIYRFRISNV GISTSINFRI QGHMMTLVEV 240 EGSHTLQEVY ESLDIHVGQS VTVLVTLKAP VKDYFIVAST RFTKPVLTTT GILSYQGSKI 300 RPSHPLPIGP TYHIHWSMKQ ARTIRLNLTA NAARPNPQGS FHYGTIPINR TFVLANGRAS 360 INGKLRYTVN RVSYVNPTTP LKLADWFNIP GVFNFKTILN IPTPGPSILG TSVFDVALHE 420 YVEFVFQNNE TSIQSWHLDG TSAYVVGYGS GTWNMANRRG YNLVDAVSRH TFQVYPKSWT 480 SILVSLDNKG MWNLRSQIWS RRYLGQELYV RVWNDERSLY TEAEPPVNAL FCGKAKRPRL 540 I* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02835 | PLN02835 | 0 | 17 | 535 | 519 | + oxidoreductase | ||
PLN02354 | PLN02354 | 0 | 19 | 536 | 527 | + copper ion binding / oxidoreductase | ||
PLN02991 | PLN02991 | 0 | 25 | 535 | 511 | + oxidoreductase | ||
PLN02792 | PLN02792 | 0 | 18 | 535 | 522 | + oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 17 | 534 | 544 | + copper ion binding / pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18561.1 | 0 | 1 | 538 | 65 | 601 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195433.1 | 0 | 1 | 538 | 1 | 540 | sks15 (SKU5 Similar 15); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
RefSeq | NP_565554.1 | 0 | 1 | 541 | 1 | 541 | sks16 (SKU5 Similar 16); copper ion binding / pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002310164.1 | 0 | 1 | 538 | 1 | 537 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522339.1 | 0 | 1 | 538 | 1 | 540 | multicopper oxidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 32 | 537 | 6 | 543 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1asq_A | 0 | 32 | 537 | 6 | 543 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1asp_B | 0 | 32 | 537 | 6 | 543 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1asp_A | 0 | 32 | 537 | 6 | 543 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1aso_B | 0 | 32 | 537 | 6 | 543 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |