Genome Details
Selected Rep_genome_ID: Rep_623
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes stercorigallinarum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR030328 | 2,242,079 | 97.12% | 0.48% | China | Asia | CGMR |
| MGYG000004536 | 2,335,647 | 98.3% | 0.48% | Israel | Asia | UHGG |
| Rep_623 | 2,326,878 | 100% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_623_CGC27 | CGCFAM_00016 | Yes | 11 | 5 | host glycan |
| Rep_623_CGC1 | CGCFAM_00300 | Yes | 4 | 2 | |
| Rep_623_CGC13 | CGCFAM_00511 | Yes | 8 | 1 | |
| Rep_623_CGC12 | CGCFAM_00607 | Yes | 6 | 1 | |
| Rep_623_CGC29 | CGCFAM_00632 | Yes | 9 | 1 | |
| Rep_623_CGC9 | CGCFAM_00715 | Yes | 6 | 1 | |
| Rep_623_CGC7 | CGCFAM_00941 | Yes | 6 | 4 | |
| Rep_623_CGC8 | CGCFAM_01056 | Yes | 4 | 2 | |
| Rep_623_CGC22 | CGCFAM_02874 | Yes | 9 | 1 | |
| Rep_623_CGC23 | CGCFAM_03696 | Yes | 9 | 1 | |
| Rep_623_CGC17 | CGCFAM_03990 | Yes | 4 | 1 | |
| Rep_623_CGC18 | CGCFAM_06440 | Yes | 8 | 2 | |
| Rep_623_CGC4 | CGCFAM_09601 | Yes | 6 | 1 | |
| Rep_623_CGC25 | CGCFAM_09603 | Yes | 7 | 1 | |
| Rep_623_CGC2 | CGCFAM_09604 | Yes | 5 | 1 |
Top CAZyme Families