Cluster: Rep_623_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_623
- CGC Family ID: CGCFAM_00607
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_623_c_13 | Rep_623_c_13_18 | 23650 | 24549 | + | 2.A.7.3.57 |
| pfam | Rep_623_c_13 | Rep_623_c_13_19 | 24630 | 27095 | + | tRNA_bind | FDX-ACB | B3_4 | B5 | tRNA_synthFbeta |
| CAZyme | Rep_623_c_13 | Rep_623_c_13_20 | 27282 | 29441 | - | GH20 |
| pfam | Rep_623_c_13 | Rep_623_c_13_21 | 29679 | 30455 | + | PRA-PH | MazG | MazG |
| pfam | Rep_623_c_13 | Rep_623_c_13_22 | 30552 | 31088 | + | Hexapep | Hexapep | Hexapep_2 |
| TC | Rep_623_c_13 | Rep_623_c_13_23 | 31110 | 32420 | + | 9.B.33.1.2 |
Gene ID: Rep_623_c_13_18
Type: TC
Location: 23650 - 24549 (+)
Type: TC
Location: 23650 - 24549 (+)
Gene ID: Rep_623_c_13_19
Type: pfam
Location: 24630 - 27095 (+)
Type: pfam
Location: 24630 - 27095 (+)
Gene ID: Rep_623_c_13_20
Type: CAZyme
Location: 27282 - 29441 (-)
Type: CAZyme
Location: 27282 - 29441 (-)
Gene ID: Rep_623_c_13_21
Type: pfam
Location: 29679 - 30455 (+)
Type: pfam
Location: 29679 - 30455 (+)
Gene ID: Rep_623_c_13_22
Type: pfam
Location: 30552 - 31088 (+)
Type: pfam
Location: 30552 - 31088 (+)
Gene ID: Rep_623_c_13_23
Type: TC
Location: 31110 - 32420 (+)
Type: TC
Location: 31110 - 32420 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes stercorigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.