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Cluster: Rep_623_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_623_c_47 Rep_623_c_47_47 49531 50415 - 1.B.57.4.2
TC Rep_623_c_47 Rep_623_c_47_48 50567 51007 - 3.D.1.8.1
TC Rep_623_c_47 Rep_623_c_47_49 51066 51761 - 2.A.122.1.1
pfam Rep_623_c_47 Rep_623_c_47_50 51807 52307 - LrgA
TC Rep_623_c_47 Rep_623_c_47_51 52572 55163 + 9.A.8.1.6
STP Rep_623_c_47 Rep_623_c_47_52 55562 56749 - Aminotran_1_2
pfam Rep_623_c_47 Rep_623_c_47_53 57089 58264 - ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | PurT_C | RS_preATP-grasp-like
CAZyme Rep_623_c_47 Rep_623_c_47_54 58455 60656 + GH163
TC Rep_623_c_47 Rep_623_c_47_55 61319 62053 + 3.A.1.140.1
Gene ID: Rep_623_c_47_47
Type: TC
Location: 49531 - 50415 (-)
Gene ID: Rep_623_c_47_48
Type: TC
Location: 50567 - 51007 (-)
Gene ID: Rep_623_c_47_49
Type: TC
Location: 51066 - 51761 (-)
Gene ID: Rep_623_c_47_50
Type: pfam
Location: 51807 - 52307 (-)
Gene ID: Rep_623_c_47_51
Type: TC
Location: 52572 - 55163 (+)
Gene ID: Rep_623_c_47_52
Type: STP
Location: 55562 - 56749 (-)
Gene ID: Rep_623_c_47_53
Type: pfam
Location: 57089 - 58264 (-)
Gene ID: Rep_623_c_47_54
Type: CAZyme
Location: 58455 - 60656 (+)
Gene ID: Rep_623_c_47_55
Type: TC
Location: 61319 - 62053 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_623_c_47_54 vegan > omnivore 1.26365 0.00181

🧭 Explore Read Mapping of CGC

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