Genome Details
Selected Rep_genome_ID: HRGMv2_3738
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp934193515
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_3738 | 2,228,392 | 99.4% | 0.598% | Japan | Asia | HRGM |
| KY169_20 | 2,431,601 | 99.4% | 0.6% | NA | Africa | H3AfricaPhase2 |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_E_23_1730.23 | 2,244,981 | 95.21% | 0.6% | NA | Africa | Hadza |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3738_CGC1 | CGCFAM_00005 | Yes | 6 | 3 | |
| HRGMv2_3738_CGC5 | CGCFAM_00056 | Yes | 6 | 1 | |
| HRGMv2_3738_CGC2 | CGCFAM_00329 | Yes | 6 | 1 | |
| HRGMv2_3738_CGC9 | CGCFAM_02042 | Yes | 7 | 1 | |
| HRGMv2_3738_CGC6 | CGCFAM_02426 | Yes | 7 | 1 | |
| HRGMv2_3738_CGC13 | CGCFAM_02598 | Yes | 4 | 1 | |
| HRGMv2_3738_CGC8 | CGCFAM_09433 | Yes | 10 | 2 |
Top CAZyme Families