Cluster: HRGMv2_3738_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3738
- CGC Family ID: CGCFAM_00056
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3738_4 | HRGMv2_3738_4_27 | 33222 | 34661 | - | GT83 |
| TF | HRGMv2_3738_4 | HRGMv2_3738_4_28 | 34735 | 35433 | - | Trans_reg_C |
| STP | HRGMv2_3738_4 | HRGMv2_3738_4_29 | 35430 | 36986 | - | HATPase_c | HisKA |
| TC | HRGMv2_3738_4 | HRGMv2_3738_4_30 | 37372 | 38415 | + | 3.A.1.24.1 |
| TC | HRGMv2_3738_4 | HRGMv2_3738_4_31 | 38396 | 39049 | + | 3.A.1.24.5 |
| TC | HRGMv2_3738_4 | HRGMv2_3738_4_32 | 39116 | 39949 | + | 3.A.1.24.1 |
Gene ID: HRGMv2_3738_4_27
Type: CAZyme
Location: 33222 - 34661 (-)
Type: CAZyme
Location: 33222 - 34661 (-)
Gene ID: HRGMv2_3738_4_28
Type: TF
Location: 34735 - 35433 (-)
Type: TF
Location: 34735 - 35433 (-)
Gene ID: HRGMv2_3738_4_29
Type: STP
Location: 35430 - 36986 (-)
Type: STP
Location: 35430 - 36986 (-)
Gene ID: HRGMv2_3738_4_30
Type: TC
Location: 37372 - 38415 (+)
Type: TC
Location: 37372 - 38415 (+)
Gene ID: HRGMv2_3738_4_31
Type: TC
Location: 38396 - 39049 (+)
Type: TC
Location: 38396 - 39049 (+)
Gene ID: HRGMv2_3738_4_32
Type: TC
Location: 39116 - 39949 (+)
Type: TC
Location: 39116 - 39949 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp934193515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.