Cluster: HRGMv2_3738_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3738
- CGC Family ID: CGCFAM_02042
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3738_9 | HRGMv2_3738_9_61 | 58913 | 60229 | - | 2.A.26.1.5 |
| pfam | HRGMv2_3738_9 | HRGMv2_3738_9_62 | 61298 | 61990 | - | TerC |
| pfam | HRGMv2_3738_9 | HRGMv2_3738_9_63 | 62131 | 63414 | - | Lar_N | LarA_C |
| CAZyme | HRGMv2_3738_9 | HRGMv2_3738_9_64 | 63610 | 65031 | - | AA4 |
| pfam | HRGMv2_3738_9 | HRGMv2_3738_9_65 | 65512 | 66312 | - | NAD_binding_2 | F420_oxidored | KARI_N | P5CR_dimer |
| STP | HRGMv2_3738_9 | HRGMv2_3738_9_66 | 66400 | 67653 | - | Aminotran_1_2 |
| TC | HRGMv2_3738_9 | HRGMv2_3738_9_67 | 67980 | 69359 | + | 2.A.3.3.22 |
Gene ID: HRGMv2_3738_9_61
Type: TC
Location: 58913 - 60229 (-)
Type: TC
Location: 58913 - 60229 (-)
Gene ID: HRGMv2_3738_9_62
Type: pfam
Location: 61298 - 61990 (-)
Type: pfam
Location: 61298 - 61990 (-)
Gene ID: HRGMv2_3738_9_63
Type: pfam
Location: 62131 - 63414 (-)
Type: pfam
Location: 62131 - 63414 (-)
Gene ID: HRGMv2_3738_9_64
Type: CAZyme
Location: 63610 - 65031 (-)
Type: CAZyme
Location: 63610 - 65031 (-)
Gene ID: HRGMv2_3738_9_65
Type: pfam
Location: 65512 - 66312 (-)
Type: pfam
Location: 65512 - 66312 (-)
Gene ID: HRGMv2_3738_9_66
Type: STP
Location: 66400 - 67653 (-)
Type: STP
Location: 66400 - 67653 (-)
Gene ID: HRGMv2_3738_9_67
Type: TC
Location: 67980 - 69359 (+)
Type: TC
Location: 67980 - 69359 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp934193515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.