Genome Details
Selected Rep_genome_ID: HRGMv2_3678
Total Genomes Found: 11
Total Genomes Found: 11
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Species
Caecibacter sp003467125
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| B127.bin_15 | 2,661,761 | 97.03% | 0.2% | China(Inner Mongolia) | Asia | IMGG |
| CGMR040916 | 2,510,579 | 99.4% | 0% | China | Asia | CGMR |
| HRGMv2_3678 | 2,811,832 | 100% | 0% | Malaysia | Asia | HRGM |
| Rep_1948 | 2,718,899 | 99.4012% | 0% | NA | NA | WIS |
| SPMP106_bin.11 | 2,870,659 | 98.8% | 0% | Singapore | Asia | SPMP |
| SPMP14_bin.50 | 2,736,553 | 92.93% | 2.4% | Singapore | Asia | SPMP |
| SPMP15_bin.11 | 2,763,925 | 94.06% | 1.8% | Singapore | Asia | SPMP |
| SPMP26_bin.50 | 2,834,133 | 98.8% | 2.02% | Singapore | Asia | SPMP |
| SPMP28_bin.72 | 2,873,475 | 99.4% | 0% | Singapore | Asia | SPMP |
| SPMP93_bin.101 | 2,614,073 | 99.75% | 0% | Singapore | Asia | SPMP |
| SW222_81 | 2,600,380 | 98.2% | 0% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3678_CGC1 | CGCFAM_00105 | Yes | 5 | 1 | |
| HRGMv2_3678_CGC10 | CGCFAM_03694 | Yes | 4 | 1 | |
| HRGMv2_3678_CGC23 | CGCFAM_03694 | Yes | 8 | 1 | |
| HRGMv2_3678_CGC5 | CGCFAM_04228 | Yes | 12 | 2 | |
| HRGMv2_3678_CGC4 | CGCFAM_04920 | Yes | 9 | 1 | |
| HRGMv2_3678_CGC6 | CGCFAM_05043 | Yes | 10 | 4 | |
| HRGMv2_3678_CGC8 | CGCFAM_06235 | Yes | 25 | 2 | |
| HRGMv2_3678_CGC24 | CGCFAM_09239 | Yes | 8 | 1 |
Top CAZyme Families