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Cluster: HRGMv2_3678_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3678_2 HRGMv2_3678_2_152 171285 177758 - 1.B.23.1.4
TF HRGMv2_3678_2 HRGMv2_3678_2_153 177852 178583 - LytTR
TC HRGMv2_3678_2 HRGMv2_3678_2_154 179530 180831 + 1.A.11.1.4
pfam HRGMv2_3678_2 HRGMv2_3678_2_155 181002 181382 + P-II
STP HRGMv2_3678_2 HRGMv2_3678_2_156 181462 182706 - Aminotran_1_2
TC HRGMv2_3678_2 HRGMv2_3678_2_157 182792 183505 - 9.B.20.1.4
pfam HRGMv2_3678_2 HRGMv2_3678_2_158 183660 184751 + Acyl_transf_3
TC HRGMv2_3678_2 HRGMv2_3678_2_159 184865 185476 + 9.B.27.2.5
CAZyme HRGMv2_3678_2 HRGMv2_3678_2_160 185557 187182 + GT83
Gene ID: HRGMv2_3678_2_152
Type: TC
Location: 171285 - 177758 (-)
Gene ID: HRGMv2_3678_2_153
Type: TF
Location: 177852 - 178583 (-)
Gene ID: HRGMv2_3678_2_154
Type: TC
Location: 179530 - 180831 (+)
Gene ID: HRGMv2_3678_2_155
Type: pfam
Location: 181002 - 181382 (+)
Gene ID: HRGMv2_3678_2_156
Type: STP
Location: 181462 - 182706 (-)
Gene ID: HRGMv2_3678_2_157
Type: TC
Location: 182792 - 183505 (-)
Gene ID: HRGMv2_3678_2_158
Type: pfam
Location: 183660 - 184751 (+)
Gene ID: HRGMv2_3678_2_159
Type: TC
Location: 184865 - 185476 (+)
Gene ID: HRGMv2_3678_2_160
Type: CAZyme
Location: 185557 - 187182 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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