Cluster: HRGMv2_3678_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3678
- CGC Family ID: CGCFAM_04228
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3678_2 | HRGMv2_3678_2_216 | 245751 | 246587 | + | 3.A.1.132.3 |
| TC | HRGMv2_3678_2 | HRGMv2_3678_2_217 | 246718 | 247431 | - | 3.A.1.4.10 |
| TC | HRGMv2_3678_2 | HRGMv2_3678_2_218 | 247431 | 248198 | - | 3.A.1.4.10 |
| TC | HRGMv2_3678_2 | HRGMv2_3678_2_219 | 248198 | 249160 | - | 3.A.1.4.1 |
| TC | HRGMv2_3678_2 | HRGMv2_3678_2_220 | 249160 | 250041 | - | 3.A.1.4.10 |
| pfam | HRGMv2_3678_2 | HRGMv2_3678_2_221 | 250078 | 251226 | - | ANF_receptor | Peripla_BP_5 | Peripla_BP_6 |
| pfam | HRGMv2_3678_2 | HRGMv2_3678_2_222 | 251732 | 253576 | - | Alk_phosphatase |
| CAZyme | HRGMv2_3678_2 | HRGMv2_3678_2_223 | 253764 | 254957 | - | GH3 |
| CAZyme | HRGMv2_3678_2 | HRGMv2_3678_2_224 | 254932 | 256098 | - | CE9 |
| pfam | HRGMv2_3678_2 | HRGMv2_3678_2_225 | 256362 | 257027 | + | NanE |
| pfam | HRGMv2_3678_2 | HRGMv2_3678_2_226 | 257077 | 257958 | + | DHDPS |
| TC | HRGMv2_3678_2 | HRGMv2_3678_2_227 | 258059 | 259543 | + | 2.A.21.3.20 |
Gene ID: HRGMv2_3678_2_216
Type: TC
Location: 245751 - 246587 (+)
Type: TC
Location: 245751 - 246587 (+)
Gene ID: HRGMv2_3678_2_217
Type: TC
Location: 246718 - 247431 (-)
Type: TC
Location: 246718 - 247431 (-)
Gene ID: HRGMv2_3678_2_218
Type: TC
Location: 247431 - 248198 (-)
Type: TC
Location: 247431 - 248198 (-)
Gene ID: HRGMv2_3678_2_219
Type: TC
Location: 248198 - 249160 (-)
Type: TC
Location: 248198 - 249160 (-)
Gene ID: HRGMv2_3678_2_220
Type: TC
Location: 249160 - 250041 (-)
Type: TC
Location: 249160 - 250041 (-)
Gene ID: HRGMv2_3678_2_221
Type: pfam
Location: 250078 - 251226 (-)
Type: pfam
Location: 250078 - 251226 (-)
Gene ID: HRGMv2_3678_2_222
Type: pfam
Location: 251732 - 253576 (-)
Type: pfam
Location: 251732 - 253576 (-)
Gene ID: HRGMv2_3678_2_223
Type: CAZyme
Location: 253764 - 254957 (-)
Type: CAZyme
Location: 253764 - 254957 (-)
Gene ID: HRGMv2_3678_2_224
Type: CAZyme
Location: 254932 - 256098 (-)
Type: CAZyme
Location: 254932 - 256098 (-)
Gene ID: HRGMv2_3678_2_225
Type: pfam
Location: 256362 - 257027 (+)
Type: pfam
Location: 256362 - 257027 (+)
Gene ID: HRGMv2_3678_2_226
Type: pfam
Location: 257077 - 257958 (+)
Type: pfam
Location: 257077 - 257958 (+)
Gene ID: HRGMv2_3678_2_227
Type: TC
Location: 258059 - 259543 (+)
Type: TC
Location: 258059 - 259543 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Species
Caecibacter sp003467125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.